Trimethylsilyl (TMS)-transient protection successfully allowed using Lithium hexamethyldisilazane (LHMDS) to prepare benzimidazole (BI) and 4-azabenzimidazole (azaBI) amidines from nitriles in 58–88% yields. This strategy offers a much better choice to prepare BI/azaBI amidines than the lengthy, low yielding Pinner reaction. Synthesis of aza/benzimidazole rings from aromatic diamines and aldehydes was affected in Dimethyl sulfoxide (DMSO) in 10–15 min, while known procedures require long time and purification. These methods are important for BI/azaBI-based drug industry and for developing specific DNA binders for expanded therapeutic applications.