As the global aviation sector expands to accommodate increasing air travel demand, the subsequent rise in flights exacerbates carbon dioxide (CO2) emissions, challenging the sector’s environmental sustainability. Targeting net-zero emissions by 2050, international aviation agencies are stressing the imperative of reducing emissions directly at their source. While the literature provides abundant estimates of aviation emissions from airline flights, there has been a lack of work aimed at quantifying CO2 emissions specific to the general aviation sector. This study investigates CO2 emissions attributed to the pilot training sub-sector within Canada’s general aviation sector. It specifically examines the initial phase of pilot training, known as ab initio training, extending through to the attainment of a commercial pilot license. Utilizing a mathematical framework alongside assumptions, combined with data on license issuances over a 23-year period, it estimated that each hour of flight training emits about 70.4 kg of CO2, varying between 44.9 kg and 94.9 kg per hour. Annual CO2 emissions from Canada’s ab initio pilot training are estimated at approximately 30,000 tons, with a possible range of 19,000 to 40,000 tons. The study also explores mitigation opportunities, such as flight simulation training devices and electric aircraft. Though focusing on Canada’s ab initio pilot training, the findings have international relevance.