The typical clinical manifestations of sporadic Creutzfeldt‐Jakob disease (sCJD) are rapid‐progressive dementia and myoclonus. However, the diagnosis of atypical sCJD can be challenging due to its wide phenotypic variations. We report an autopsy case of variably protease‐sensitive prionopathy (VPSPr) with Met/Met homogeneity at codon 129. An 81‐year‐old woman presented with memory loss without motor symptoms. Seventeen months after the onset, her spontaneous language production almost disappeared. Diffusion‐weighted images (DWI) showed hyperintensity in the cerebral cortex while electroencephalogram (EEG) showed nonspecific change. 14‐3‐3 protein and real‐time qualing‐induced conversion (RT‐QuIC) of cerebrospinal fluid were negative. She died at age 85, 3.5 years after the onset. Pathological investigation revealed spongiform change, severe neuronal loss, and gliosis in the cerebral cortex. Mild to moderate neuronal loss and gliosis were observed in the basal ganglia. PrP immunostaining revealed plaque‐like, dotlike, and synaptic structures in the cerebral cortex and small plaque‐like structures in the molecular layer of the cerebellum. Analysis of PRNP showed no pathogenic mutations, and Western blot examination revealed the lack of a diglycosylated band consistent with VPSPr. The present case, which is the first report on a VPSPr case in Japan, supports previously published evidence that VPSPr cases can present variable and nonspecific clinical presentations. Because a small number of VPSPr cases can show typical magnetic resonance imaging (MRI) change in sCJD. We should investigate the possibility of VPSPr in a differential diagnosis with atypical dementia that presented DWIs of high intensity in the cortex, even though 14‐3‐3 proteins and RT‐QuIC are both negative. In addition, VPSPr cases can take a longer clinical course compared to that of sCJD, and long‐term follow‐up is important.