NONSTANDARD ABBREVIATIONS psychostimulant use disorders (PUDs) methamphetamine (MA) quantitative trait locus (QTL) substance use disorders (SUDs) DBA/2J (D2J) C57BL/6J (B6J) Hnrnph1 mutants (H1 +/-) quantitative trait variant (QTV) real-time quantitative PCR (qPCR)
ABSTRACTWe previously identified a 210 kb region on chromosome mm10) containing two protein-coding genes (Hnrnph1, Rufy1) that was necessary for reduced methamphetamine-induced locomotor activity in C57BL/6J congenic mice harboring DBA/2J polymorphisms. Gene editing of a deletion in the first coding exon of each gene supported Hnrnph1 as a quantitative trait gene. We since showed that Hnrnph1 mutants also exhibit a reduction in methamphetamine-induced reward, reinforcement, and dopamine release. However, the quantitative trait variants (QTVs) that modulate Hnrnph1 at the molecular level are not known. There are nine SNPs and seven indels that distinguish C57BL/6J from DBA/2J within Hnrnph1, including four variants within the 5' UTR. Here, we show that a 114 kb introgressed region containing Hnrnph1 and Rufy1 was sufficient to induce a decrease in MA-induced locomotor activity. Transcriptome analysis of 114 kb congenics versus Hnrnph1 mutants identified a nearly perfect correlation of fold-change in expression in differentially expressed genes common to both mouse lines, indicating functionally similar effects on the transcriptome and behavior. Ten overlapping genes showed differential exon usage, including Hnrnph1 and Ppp3ca. Differential 5' UTR exon usage of Hnrnph1 and Ppp3ca were validated using real-time quantitative PCR. Cloning of the Hnrnph1 5' UTR containing all four variants together (but none of them individually) induced a functional decrease in reporter expression in both HEK293 and N2a cells, thus identifying a set of QTVs underlying molecular regulation of Hnrnph1.
KEY WORDSRNA Binding Protein, Functional Variants, Positional Cloning, Alternative Splicing, Calcineurin
INTRODUCTIONPsychostimulant use disorders (PUDs), including methamphetamine (MA) and cocaine dependence, are a serious public health concern in the United States. While the opioid epidemic crisis continues to garner warranted attention, there has been much less focus on the recent steep surge in PUDs, as evidenced by the steep increase in PUD-related deaths, especially MA-related deaths (1). This public health concern is particularly problematic, given that there are no FDA-approved treatments for PUDs. Both genetic and environmental factors contribute to PUDs (2), yet genome-wide association studies to date have identified very few genetic factors (3).One notable example was the identification of a genome-wide association between FAM53B and cocaine dependence in humans (4). This finding was particularly interesting in the context of a mouse forward genetic study of psychostimulant addiction traits that identified a trans-expression quantitative trait locus (QTL) originating from a locus containing Cyfip2 and Hnrnph1 that influenced Fam53b expression and was associated with...