In this issue of Genes & Development, Mordes and colleagues (pp. 1478-1489) reveal intriguing mechanistic insights into activation of the ATR (ATM and Rad3-related) kinase critical for DNA damage resistance. They identify conserved regulatory domains within ATR and its binding partner ATRIP (ATR-interacting protein), which are contacted by the ATR activator TopBP1. These discoveries expand on our understanding of the regulation of other PIKK family members, which also contain these domains, and illustrate how functional diversity has been achieved among these kinases.Every cell cycle poses a challenge to the maintenance of genomic stability. Two members of the PIKK family, ATM (ataxia-telangiectasia mutated) and ATR (ATM and Rad3-related), govern signaling cascades that meet this challenge by detecting and responding to DNA damage to elicit crucial responses such as cell cycle arrest, transcriptional changes, and DNA repair (for review, see Harper and Elledge 2007). This program can contribute directly to tumor suppression not only via maintenance of genome integrity, but also via its engagement of such programs as senescence and apoptosis, which prevent damaged cells from undergoing further divisions. Although ATM and ATR share common downstream substrates such as p53 and BRCA1, they primarily respond to different stimuli. ATM responds to double-strand breaks while ATR responds primarily to replication stress and ssDNA gaps. ATR can also respond to doublestrand breaks but with much slower kinetics than ATM. As part of the PIKK family, ATM and ATR share a highly conserved C-terminal kinase domain. However, wide functional diversity has been achieved among family members, for while ATM, ATR, and DNA-PKcs are all involved in DNA damage signaling or repair, mTOR regulates protein biosynthesis, and SMG1 functions in nonsense-mediated decay. Several recent studies have highlighted how functional specificity has been achieved among these family members through their use of unique binding partners, post-translation modifications, and regulatory domains. However, unlike other serine/ threonine kinases, how PIKK kinases are activated mechanistically is poorly understood. In this issue of Genes & Development, Cortez and colleagues (Mordes et al. 2008) have uncovered conserved regulatory domains in PIKKs that illuminate how activation of ATR occurs, and how specialization of ATR among PIKK family members has been achieved in the cell. These discoveries provide an important inroad into dissecting the mechanism of PIKK activation, and thus have the potential to inform a large swath of biology.
Activation of the ATR Pathway via TopBP1ATR is recruited to ssDNA via its stable partner ATRIP (ATR-interacting protein), which binds to Replication Protein A (RPA)-coated ssDNA (Cortez et al. 2001;. A second complex, the Rad17/Rfc2-5 complex, is independently recruited to ssDNA where it is loaded in an RPA-dependent manner. The presence of a dsDNA-ssDNA junction, as might be found at a stalled replication fork, activates this complex ...