Tenacibaculum sediminilitoris sp. nov., isolated from a tidal flat

Park, Sooyeon; Ha, Min-Ji; Jung, Yong-Taek; Kang, Chul-Hyung; Yoon, Jung‐Hoon

doi:10.1099/ijsem.0.001086

Cited by 10 publications

(4 citation statements)

References 37 publications

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“…The genus Tenacibaculum encompasses bacteria that are associated with the marine environment and can be pathogenic (Park et al, 2016; Smage et al, 2016). This Tenacibaculum ASV has a 100% sequence identity with Tenacibaculum sediminilitoris —an isolate from tidal flats (Park et al, 2016). Both tidal flat sediments and seawater are sources of Tenacibaculum; therefore, it is possible that the presence of this genus during high wave activity is due to sedimentation resuspension.…”

Section: Discussionmentioning

confidence: 99%

Oceanographic habitat and the coral microbiomes of urban-impacted reefs

Rosales

Sinigalliano

Gidley

et al. 2019

PeerJ

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Coral reefs are in decline worldwide. In response to this habitat loss, there are efforts to grow, outplant, and restore corals in many regions. The physical oceanographic habitat of corals—such as sea temperature, waves, ocean currents, and available light—is spatially heterogeneous. We therefore hypothesize that outplant location may affect microbiomes, and ultimately, coral health and restoration success. We evaluated the influence of the physical oceanographic habitat on microbes in wild Porites astreoides and Siderastrea siderea. Tissue samples were collected at four Florida reefs in March, June, and September of 2015. We estimated oceanographic conditions from moored instruments, diver observations, remote sensing data, and numerical models. We analyzed microbiomes using amplicon 16S rRNA high-throughput sequencing data. We found microbial alpha-diversity negatively correlated with in situ sea temperature (which represented both the annual cycle and upwelling), as well as modeled alongshore currents, in situ sea-level, and modeled tide. Microbial beta-diversity correlated positively with significant wave height and alongshore currents from models, remotely-sensed relative turbidity, and in situ temperature. We found that archaea from the order Marine Group II decrease with increases in significant wave height, suggesting that this taxon may be influenced by waves. Also, during times of high wave activity, the relative abundance of bacteria from the order Flavobacteriales increases, which may be due to resuspension and cross-shelf transport of sediments. We also found that bacteria from the order SAR86 increase in relative abundance with increased temperature, which suggests that this taxon may play a role in the coral microbiome during periods of higher temperature. Overall, we find that physical oceanographic variability correlates with the structure of these coral microbiomes in ways that could be significant to coral health.

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Section: Discussionmentioning

confidence: 99%

Oceanographic habitat and the coral microbiomes of urban-impacted reefs

Rosales

Sinigalliano

Gidley

et al. 2019

PeerJ

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“…The genus Tenacibaculum , part of the family Flavobacteriaceae , was first proposed by Suzuki et al [1] with the report of the two novel species Tenacibaculum mesophilum and Tenacibaculum amylolyticum and reclassification of two species of the genus Flexibacter as Tenacibaculum maritimum and Tenacibaculum ovolyticum. At the time of writing, the genus Tenacibaculum comprises 34 species with validly published names and 6 species names that have been proposed but not validly published (https://lpsn.dsmz.de/genus/tenacibaculum) isolated from diverse marine sources, such as marine organisms [1–6] and marine sediments [7–14]. Members of the genus Tenacibaculum are described as aerobic bacteria with non-flagellated, rod-shaped, Gram-stain-negative cells with gliding motility, producing yellow pigments, mainly zeaxanthin.…”

Section: Full-textmentioning

confidence: 99%

“… *Data from Kristyanto et al [6] † Data from Kim et al [3] ‡ Data from Park et al [11] § Data from Choi et al [8] …”

Section: Physiology and Chemotaxonomymentioning

confidence: 99%

“…At the time of writing, the genus Tenacibaculum comprises 34 species with validly published names and 6 species names that have been proposed but not validly published (https://lpsn. dsmz.de/genus/tenacibaculum) isolated from diverse marine sources, such as marine organisms [1][2][3][4][5][6] and marine sediments [7][8][9][10][11][12][13][14]. Members of the genus Tenacibaculum are described as aerobic bacteria with non-flagellated, rod-shaped, Gram-stainnegative cells with gliding motility, producing yellow pigments, mainly zeaxanthin.…”

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Tenacibaculum tangerinum sp. nov., isolated from a tidal flat sediment

Lee,

Yoo,

Kwon

et al. 2023

International Journal of Systematic and Evolutionary Microbiology

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An orange-coloured bacterium, designated as strain GRR-S3-23T, was isolated from a tidal flat sediment collected from Garorim Bay, Chuncheongbuk-do, Republic of Korea. Cells of GRR-S3-23T were aerobic, Gram-stain-negative, rod-shaped and motile. GRR-S3-23T grew at 18–40 °C (optimum, 30 °C), pH 7.0–9.0 (optimum, pH 7.0) and with 2–4 % NaCl (optimum, 2–3 % w/v). Results of 16S rRNA gene sequence analysis indicated that GRR-S3-23T was closely related to Tenacibaculum aiptasiae a4T (97.6 %), followed by Tenacibaculum aestuarii SMK-4T (97.5 %), Tenacibaculum mesophilum MBIC 1140T (97.4 %), Tenacibaculum singaporense TLL-A2T (97.3 %), Tenacibaculum crassostreae JO-1T (97.2 %),and Tenacibaculum sediminilitoris YKTF-3T (97.1 %). The average amino acid identity values between GRR-S3-23T and the related strains were 86.8–72.8 %, the average nucleotide identity values were 83.3–74.1 %, and the digital DNA–DNA hybridization values were 27.0–19.6 %. GRR-S3-23T possessed menaquinone-6 (MK-6) as major respiratory quinone and had summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c, 20.6 %) and iso-C15 : 1G (10.8 %) as major fatty acids (>10.0 %). The polar lipid profiles of GRR-S3-23T contained phosphatidylethanolamine, one unidentified aminolipid, one unidentified aminophospholipid, three unidentified lipids, one unidentified glycolipid and four unidentified phospholipids. The DNA G+C content of GRR-S3-23T was 33.7%. On the basis of the results of the polyphasic analysis involving phylogenetic, phylogenomic, physiological and chemotaxonomic analyses described in this study, GRR-S3-23T is considered to represent a novel species within the genus Tenacibaculum , for which the name Tenacibaculum tangerinum is proposed. The type strain is GRR-S3-23T (=KCTC 102029T=KACC 23271T=JCM 36353T).

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Tenacibaculum

Duchaud

Bernardet

2023

Bergey's Manual of Systematics of Archaea and Bacteria

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Te.na.ci.ba'cu.lum. L. adj. tenax ‐acis , holding fast, tenacious; L. neut. n. baculum , stick; N.L. neut. n. Tenacibaculum , rod‐shaped bacterium that adheres to the surface of marine organisms. Bacteroidetes / Flavobacteriia / Flavobacteriales / Flavobacteriaceae / Tenacibaculum Members of the genus Tenacibaculum are exclusively found in marine environments. Most of them are attached to or associated with the surface of marine organisms such as fish, macroalgae, sponges, and invertebrates. However, some strains were isolated from seawater or marine sediments. Several species are important fish pathogens while others are able to degrade complex polysaccharides such as carrageenans or alginate. Rods are 0.1–0.7 μm in diameter and 0.4–40 μm in length. Filamentous cells >100 μm long and degenerative spherical cells may occur in older cultures. Ring‐shaped cells, spores, and gas vesicles are not formed. Cells are nonflagellated. Cells of most, if not all, species are motile by gliding. Gram‐stain‐negative. Cells produce a yellow pigment that is mainly zeaxanthin. Flexirubin‐type pigments are absent. Chemo‐organotrophic and heterotrophic. Aerobic. Catalase‐ and oxidase‐positive. Grow well on media containing seawater. The major respiratory quinone is menaquinone‐6. DNA G + C content (mol%) from the draft or complete genome sequence analysis : 29.6–32.2 (38.4 for Tenacibaculum litopenaei ). Type species : Tenacibaculum maritimum Suzuki et al. 2001 VP (basonyms: “ Flexibacter marinus ” Hikida et al. 1979, Flexibacter maritimus Wakabayashi et al. 1986 VP , “ Cytophaga marina ” Reichenbach 1989).

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Tenacibaculum sediminilitoris sp. nov., isolated from a tidal flat

Cited by 10 publications

References 37 publications

Oceanographic habitat and the coral microbiomes of urban-impacted reefs

Oceanographic habitat and the coral microbiomes of urban-impacted reefs

Tenacibaculum tangerinum sp. nov., isolated from a tidal flat sediment

Tenacibaculum

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