Previously we reported on the presence of a high (2′-5′)oligoadenylate synthetase activity in the marine sponge Geodia cydonium [Kuusksalu, A., Pihlak, A., Müller, W. E. G. & Kelve, M. (1995) Eur. J. Biochem. 232, 351Ϫ357]. The presence of (2′-5′)oligoadenylates [(2′-5′)A] in crude sponge extract was shown by radioimmunoassay and by their HPLC comigration with authentic (2′-5′)A oligomers. In addition, the sponge (2′-5′)oligoadenylates displayed biological activity, as determined by inhibition studies of protein biosynthesis in rabbit reticulocyte lysate. In the present study individual (2′-5′)oligoadenylates synthesized by sponge enzyme were separated by HPLC. The exact composition of every oligonucleotide peak eluted was determined by matrix-assisted laser-desorption-ionization mass spectrometry (MALDI-MS) analysis. The 2′-5′ phosphodiester bond in oligoadenylates was verified by NMR analysis. Based on the high concentration of (2′-5′)A oligomers in G. cydonium and their similarity with those found in mammals we propose that the (2′-5′)A system is involved in a cytokine-mediated pathway and/ or in a protection system against viruses, present in the marine environment.Keywords : (2′-5′)oligoadenylate; Geodia cydonium ; matrix-assisted laser-desorption-ionization MS; NMR.Sponges (Porifera) are the simplest multicellular animals, which have existed since the Proteozoic period [1]. In the past few years several cDNA/gene sequences have been isolated and characterized from sponges, especially from the marine demosponge Geodia cydonium. Analyses revealed that sponges contain proteins of the extracellular matrix/basal lamina (e.g. integrin receptor [2], collagen [3] or galectin [4,5]), cell-surface receptors (tyrosine kinase receptor [6]), elements of the sensory system (crystallin [7], metabotropic glutamate receptor [8]) and homologs/modules of an immune system (immunoglobulin-like domains [9], scavenger receptor cysteine-rich domains and short consensus repeats [10], Rh-like protein [11]). These molecules were found to display high similarity to sequences from members of higher metazoan phyla [12].Recently a cDNA encoding a putative cytokine, the endothelial monocyte-activating polypeptide [13], was identified in G. cydonium [14]. The physiological role of this factor in sponges is not known. One pathway in mammalian organisms which is controlled by cytokine(s) is the (2′-5′)oligoadenylate [2′-5′(A)] system. It regulates the RNA degradation pathway and is inCorrespondence to M. Kelve,