To understand the functional differences between a nontoxic membrane anchor corresponding to the N-terminal sequence of the Escherichia coli enzyme IIA Glc and a toxic antimicrobial peptide aurein 1.2 of similar sequence, a series of peptides was designed to bridge the gap between them. An alteration of a single residue of the membrane anchor converted it into an antibacterial peptide. Circular dichroism spectra indicate that all peptides are disordered in water but helical in micelles. Structures of the peptides were determined in membrane-mimetic micelles by solution NMR spectroscopy. The quality of the distance-based structures was improved by including backbone angle restraints derived from a set of chemical shifts ( ) from natural abundance two-dimensional heteronuclear correlated spectroscopy. Different from the membrane anchor, antibacterial peptides possess a broader and longer hydrophobic surface, allowing a deeper penetration into the membrane, as supported by intermolecular nuclear Overhauser effect cross-peaks between the peptide and short chain dioctanoyl phosphatidylglycerol. An attempt was made to correlate the NMR structures of these peptides with their antibacterial activity. The activity of this group of peptides does not correlate exactly with helicity, amphipathicity, charge, the number of charges, the size of the hydrophobic surface, or hydrophobic transfer free energy. However, a correlation is established between the peptide activity and membrane perturbation potential, which is defined by interfacial hydrophobic patches and basic residues in the case of cationic peptides. Indeed, 31 P solid state NMR spectroscopy of lipid bilayers showed that the extent of lipid vesicle disruption by these peptides is proportional to their membrane perturbation potential.Recent interest in the search for alternative therapeutics is growing because of the drug resistance problem with traditional antibiotics. Antimicrobial peptides have attracted much attention because of their favorable properties, such as rapid killing, wide spectrum, and rare development of drug resistance. It is believed that these properties of antimicrobial peptides can be attributed to their ability to target bacterial membranes (1-4).Membrane targeting also plays a fundamental role in virus infection and intra-and intercell signal transduction. For example, enzyme IIA Glc 1 from Escherichia coli is identified as an amphitropic protein, which can exist either in the cytoplasm or by attaching to the cytoplasmic membrane (5). Both states are essential for the protein cascade to ensure a successful phosphoryl transfer from the high energy molecule phosphoenolpyruvate to the incoming glucose. Membrane association of IIA Glc is achieved through an N-terminal membrane anchor (hereinafter referred to as peptide A1), which, according to two-dimensional NMR characterization, forms a short threeturn amphipathic helical structure in phospholipids (6). Because another membrane-targeting sequence similar to this anchor is conserved in other speci...