Expression of the type III protein secretion system (TTSS), encoded in the locus of enterocyte effacement (LEE) of enterohemorrhagic Escherichia coli (EHEC), has been shown to be controlled by various regulators. In a search for additional regulatory genes, we identified a DNA fragment containing clpX and clpP that has a positive regulatory effect on LEE expression in EHEC O157. The expression of LEE-encoded Esp proteins was significantly reduced in a clpXP deletion mutant. Deletion of grlR, a negative regulatory gene within LEE, markedly increased LEE expression even in the clpXP mutant. To verify the regulatory mechanism of GrlR expression, a chromosomal epitope-tagged allele of grlR (grlR-FLAG) was constructed. GrlR-FLAG expression was increased significantly in the clpXP deletion mutant, suggesting that the GrlR level is under the control of ClpXP, and this regulation is critical for the ClpXP-dependent expression of LEE in EHEC. Deletion of rpoS, the gene encoding a stationary-phase-inducing sigma factor that is a substrate for ClpXP protease, partially restored LEE expression in the clpXP mutant. A multicopy plasmid carrying rpoS strongly repressed expression of Esp proteins, suggesting that positive regulation by ClpXP is partially mediated through a negative effect of RpoS on LEE expression. We also found that rpoS deletion induces transcription of pchA, which encodes one of the positive regulators for LEE expression in EHEC. These results suggest that ClpXP controls expression of LEE through the regulation of RpoS and GrlR levels in EHEC.Enterohemorrhagic Escherichia coli (EHEC) strains are lifethreatening human pathogens and cause hemorrhagic colitis, bloody diarrhea, and hemolytic uremic syndrome (40). EHEC is a member of the attaching and effacing pathogens (40, 56), a group that includes enteropathogenic E. coli (EPEC) (39) and the mouse pathogen Citrobacter rodentium (45). The attaching/effacing lesion on intestinal epithelial cells is characterized by destruction of microvilli and formation of a pedestal-like structure, triggered by rearrangement of cytoskeletal proteins (30, 42). The genes essential for causing the attaching/ effacing lesion are encoded in a pathogenicity island designated the locus of enterocyte effacement (LEE). LEE consists of more than 40 genes organized into five major operons, designated LEE1 to LEE5 (6,8,43). LEE1, -2 and -3 operons contain mostly genes encoding the structural and auxiliary proteins necessary for formation of a dedicated type III protein secretion system (TTSS) (22). The LEE4 operon encodes several secreted proteins (e.g., EspA, EspB, EspD, and EspF), all of which are secreted through TTSS (28, 29, 34, 37). The LEE5 operon encodes an adhesion factor, designated intimin (23, 24), and Tir, a protein that is also translocated through TTSS and acts as a receptor for intimin at the host cell membrane (27).A transcriptional activator, Ler, is encoded by the first gene of the LEE1 operon and is essential for the expression of almost all LEE genes (9, 38). Deng et...