Phytohormones are major signaling components that contribute to nearly all aspects of plant life. They constitute an interconnected communication network to finetune growth and development in response to the ever-changing environment. To this end, they have to coordinate with other signaling components, such as reactive oxygen species (ROS) and calcium signals. Especially the two endosymbiotic organelles, plastids and mitochondria, control various aspects of phytohormone signaling and harbour important steps of hormone precursor biosynthesis. Vice versa, phytohormones have feedback actions on organellar functions. Besides that, organelles and phytohormones often act in parallel in a coordinated matter to regulate cellular functions. Therefore, linking organelle functions with the increasing knowledge about phytohormone biosynthesis, perception and signaling will reveal new aspects of plant stress tolerance. In this review, we high-light recent work on organelle-phytohormone interactions focusing on the major stress related hormones abscisic acid (ABA), jasmonates, salicylic acid (SA) and ethylene.