The complete chloroplast genome of Semenovia gyirongensis (Tribe Tordylieae, Apiaceae)

Abstract

Semenovia gyirongensis is an endemic species in China. The complete chloroplast (cp) genome sequence of S. gyirongensis was generated by de novo assembly using whole genome next-generation sequencing. The cp genome was a circular structure and 147,246 bp in length, composed of four distinct regions such as large single-copy (LSC) region of 92,833 bp, small single-copy (SSC) region 17,545 bp, and a pair of inverted repeat regions of 36,868 bp. The cp genome contained 129 genes, including 85 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. The GC content was 37.6%. Phylogenetic analysis of 21 representative plastomes indicated that the S. gyirongensis was close to Pastinaca pimpinellifolia, Cnidium officinale, and Ligusticum sinense in the family Apiaceae.

Plastid Phylogenomic Analysis of Tordylieae Tribe (Apiaceae, Apioideae)

“…In Apiaceae plastomes, gene order and genome structure are significantly conserved [ 7 , 8 , 9 , 10 , 11 , 12 , 13 , 14 , 15 , 16 , 17 , 18 , 19 , 20 , 21 , 22 , 23 , 24 , 25 , 26 , 27 , 28 ]. However, while for land plant’s plastomes (from early non-vascular plants to angiosperms), a general trend of IR enlarging can be seen [ 1 , 29 ], in the Apioideae subfamily of Apiaceae, a contrary tendency of IR shrinking is observed [ 26 , 30 ].…”

“…Moreover, two of ten plastomes of Angelica sinensis (Oliv.) Diels (member of Sinodielsia clade from the apioid superclade), and two of three available Semenovia plastomes showed absence of the insertion [ 21 , 28 ]. Therefore, its appearance, distribution across plastomes from members of the Tordylieae tribe and allied taxa that were yet unsampled, and utility of the specific plastome rearrangements as phylogenetic markers are of special interest.…”

The complete chloroplast genome of Ligusticopsis acaulis (Shan et Sheh) Pimenov (Apiaceae), an endemic species from China

“… 2019 ), S. gyirongensis NC_042912 (Xiao et al. 2019 ), A. graveolens NC_029470 (Peery 2015 ), F. vulgare NC_029469 ( www.ncbi.nlm.nih.gov/ ), P. crispum NC_015821 (Downie and Jansen 2015 ), A. graveolens NC_041087 ( www.ncbi.nlm.nih.gov/ ), P. fedtschenkoi KY652265 (Mustafina et al. 2019 ), C. carvi NC_029889 ( www.ncbi.nlm.nih.gov/ ), C. maritimum NC_015804 (Downie and Jansen 2015 ), D. carota NC_008325 (Ruhlman et al.…”

Complete plastome sequence of Tetrataenium Candicans (tribe Tordylieae, Apiaceae): a medicinal plant

“…The experiment procedure is as reported in Xiao et al. ( 2019 ). Around 5 Gb raw data were assembled against the plastome of Semenovia gyirongensis (MK757488) (Xiao et al.…”

“…Around 5 Gb raw data were assembled against the plastome of Semenovia gyirongensis (MK757488) (Xiao et al. 2019 ) using Geneious version 11.0.4 (Kearse et al. 2012 ).…”