The complete chloroplast genome of Korean Pyrus ussuriensis Maxim. (Rosaceae): providing genetic background of two types of P. ussuriensis

Abstract

View related articles View Crossmark data Citing articles: 9 View citing articles MITOGENOME ANNOUNCEMENT The complete chloroplast genome of Korean Pyrus ussuriensis Maxim. (Rosaceae): providing genetic background of two types of P. ussuriensis

The complete chloroplast genomes of two cold hardness coffee trees, Coffea arabica L. (Rubiaceae)

“…CH1 and CH2 chloroplast genomes have six insertions and deletions (INDELs) against CH3, another cold hardness coffee ) and two INDELs against TY1 chloroplast. It is similar to those of Camellia japonica (Park, Kim, Xi, Oh, et al 2019b), Cucumis melo (Zhu et al 2016), Chenopodium quinoa (Maughan et al 2019), Abeliophyllum distichum , Salix koriyanagi , Populus alba x Populus glandulosa , and Marchantia polymorpha (4 SNPs; Kwon et al 2019) and smaller than those of other chloroplasts of Pyrus ussuriensis (Cho et al 2019), Pseudostellaria palibiniana , Aconitum coreanum (Kim, Yi, et al 2019), Artemisia fukudo , Goodyera schlechtendaliana (Oh et al 2019), Dysphania pumilio , Nymphaea alba (Park, Kim, Kwon, Nam, et al 2019), Liriodendron tulifipera , Duchesnea chrysantha (Park, Kim, Lee 2019), Illicium anisatum , Salix koriyanagi , Viburnum erosum (Choi et al, 2020), Abeliophyllum distichum , and Camellia japonica (Park, Kim, Xi, Oh et al 2019a).…”

The Complete Chloroplast Genome of Arabidopsis thaliana Isolated in Korea (Brassicaceae): An Investigation of Intraspecific Variations of the Chloroplast Genome of Korean A. thaliana

“…This is also caused by the inserted region of the Tsu0 chloroplast genome. Other plant chloroplasts of which intraspecific variations of the GC contents are identical to those of A. thaliana are Goodyera schlechtendaliana (37.1% and 37.2%) [ 53 – 55 ] and Gastrodia elata (26.7% and 26.8%) [ 56 – 58 ] which are same to those of Arabidopsis thaliana , while Coffea arabica [ 50 , 59 – 63 ], Viburnum erosum [ 64 , 65 ], Duchesnea chrysantha [ 20 , 21 ], Salix koriyanagi [ 66 , 67 ], Pseudostellaria palibiniana [ 23 , 25 ], and Pyrus ussuriensis [ 68 , 69 ] present no difference in the intraspecific GC contents.…”

“…The numbers of SNPs and INDELs, 50 and 14, respectively, between 180404IB4 and Col0 are smaller than those of Marchantia polymorpha between Korea and Poland (69 SNPs and 660 INDELs) [ 71 ], Camellia japonica (78 SNPs and 643 INDELs) [ 72 ], Rehmannia glutinosa (147 SNPs and 87 INDELs) [ 73 ], and Selaginella tamariscina (1,213 SNPs and 1,641 INDELs) [ 74 ] between Chinese and Korean isolates, Pseudostellaria palibiniana (84 SNPs and 125 INDELs) [ 25 ] and Pyrus ussuriensis inside Korea (121 SNPs and 781 INDELs) [ 68 ], Eucommia ulmoides inside China (75 SNPs and 80 INDELs) [ 75 ], some cases of Cucumis melo [ 76 ] and Chenopodium quinoa [ 70 ], all of Dioscorea polystachya [ 77 ], Oryza sativa among cultivars [ 78 ], G. schlechtendaliana [ 53 ], and G. elata [ 56 ] ( Table 2 ). Some of species, such as Potentilla (49 SNPs and 17 INDELs are identified from Potentilla stolonifera var.…”

“…This case is similar to those of C. arabica , showing one 84 bp insertion region [ 50 ] and D. chrysantha , presenting three insertion regions [ 21 ]. In terms of the number of INDELs, it is also in relation to high intraspecific variations that only P. ussuriensis [ 68 ], G. schlechtendaliana [ 53 ], and G. elata [ 56 ] present higher numbers of INDELs ( Table 3 ). In addition, two out of the three Orchidaceae species shows high rates of divergence in terms of flower morphologies as well as the number of species [ 81 – 83 ].…”

The complete chloroplast genome of Euscaphis japonica (Thunb.) Kanitz (Staphyleaceae) isolated in Korea

“…Based on pairwise alignment with the chloroplast of E. japonica from China (MN159078), 424 SNPs (0.26%) and 809 INDELs (0.50%) were identified, displaying relatively large amount of intraspecific variations: larger than those of Pyrus ussuriensis (Cho et al 2019), Agrimonia pilosa (Heo et al 2020), Camellia japonica (Park et al 2019b), and Marchantia polymorpha (Kwon et al 2019). However, it is less than those of Goodyera schlechtendaliana (844 SNPs and 2045 INDELs; Oh et al 2019bOh et al , 2019a and Gastrodia elata (493 SNPs and 650 INDELs; Kang et al 2020;Park et al 2020) from Orchidaceae.…”