The complete chloroplast genome of Euscaphis japonica (Thunb.) Kanitz (Staphyleaceae) isolated in Korea

Abstract

The complete chloroplast genome of Euscaphis japonica (Thunb.) Kanitz isolated in Korea is 160,606 bp long and has four subregions: 89,232 bp of large single-copy and 18,734 bp of small single-copy regions are separated by 26,320 bp of inverted repeat regions including 129 genes (84 CDS, 8 rRNAs, and 37 tRNAs) and three pseudogenes. There were 424 SNPs and 809 INDELs compared with the Chinese E . japonica , useful to develop markers for phylogeographic study of the species. Phylogenetic trees show that E . japonica , representing Crossosomatales, is nested within the Malvids clade, confirming previous studies.

The complete chloroplast genome of Zoysia matrella (L.) Merr. isolated in Korea (Poaceae): investigation of intraspecific variations on chloroplast genomes

“…Numbers of SNPs and INDELs are less than those of species between two countries (Jeon et al. 2019 ; Oh and Park 2020 ; Park, Kim, Lee 2019 ); however, similar to those identified inside Korea (Choi YG et al. 2019 ; Kim, Yi, et al.…”

The complete chloroplast genome of Aruncus dioicus var. kamtschaticus (Rosaceae)

“… 2020 ), Camellia japonica (Park et al. 2019 ), Euscaphis japonica (Oh and Park 2020 ), Selaginella tamariscina (Park, Kim, et al. 2020 ), and Marchantia polymorpha subsp.…”

The complete mitochondrial genome of Aphis gossypii Glover, 1877 (Hemiptera: Aphididae) isolated from Leonurus japonicus in Korea

“…Similar to the previous studies in which complete genomes were rescued from the sample containing multiple organisms (Bae et al 2020;Oh et al in 2008). Gaps were closed with SOAPGapCloser v1.12 (Zhao et al 2011), BWA v0.7.17, andSAMtools v1.9 (Li et al 2009;Li 2013) under the environment of Genome Information System (GeIS; http://geis.infoboss.co.kr/).…”