The complete mitochondrial genome of
            <i>Eremias multiocellata</i>
            (Squamata: Lacertidae)

Tong, Qing-Lin; Yao, Yun-Tao; Li, Lin; Ji, Xiang

doi:10.3109/19401736.2014.958714

Cited by 4 publications

(3 citation statements)

References 3 publications

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“…[35]). Mitogenomes of other species included in the analysis were: Podarcis muralis (Acc # NC011607, FJ460597; [15]), P. siculus (Acc # NC011609, FJ460598; [15]), Lacerta viridis (Acc # NC008328 [39]) L. agilis (Acc # NC021766, KC990830; Qin & Tao, unpublished), L. bilineata (Acc # KT722705, NC028440; [40], Takydromus tachydromoides (Acc # NC008773 [41], T. amurensis (Acc # NC030209, KU641018; [42]) T. sexlineatus (Acc # NC022703, KF425529 [43]), T. wolteri (Acc # NC018777, JX181764; [44]), Zootoca vivipara (Acc # NC026867 [45]) and Phoenicolacerta kulzeri (Acc # FJ460596 (16)), Eremias argus (Acc # IQ086345, NC016755; Kim et al, unpublished), E. multiocellata (Acc # KJ664798, KM257724; NC025304 [46]), E. przewalskii (Acc # KM507330, NC025929; [47]), E. stummeri (Acc # NC029878, KT372881; [48]) E. vermiculata (Acc # NC025320, KP981389, KM104865; [46]) (Acc # KP981388; [46]), and E. velox (Acc # KM359148; [48] E. brenchleyi (Acc # EF490071; NC011764 Rui et al, unpublished).…”

Section: Genome Assemblymentioning

confidence: 99%

Phylogeny of caucasian rock lizards (Darevskia) and other true lizards based on mitogenome analysis: Optimisation of the algorithms and gene selection

et al. 2020

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We generated a phylogeny for Caucasian rock lizards (Darevskia), and included six other families of true lizards (Lacertini), based on complete mitochondrial genome analysis. Nextgeneration sequencing (NGS) of genomic DNA was used to obtain 16 new mitogenomes of Darevskia. These, along with 35 sequences downloaded from GenBank: genera Darevskia, Zootoca, Podarcis, Phoenicolacerta, Takydromus, Lacerta, and Eremias-were used in the analysis. All four analytical methods (Bayesian Inference, BI; Maximum Likelihood, ML; Maximum Parsimony, MP; and Neighbor-Joining, NJ) showed almost congruent intrageneric topologies for Darevskia and other lizard genera. However, ML and NJ methods on one side, and BI and MP methods on the other harvested conflicting phylogenies. The ML/ NJ topology supports earlier published separation of Darevskia into three mitochondrial clades (Murphy, Fu, Macculloch, Darevsky, and Kupinova, 2000), but BI and MP topologies support that the basal branching occurred between D. parvula from the western Lesser Caucasus and the rest of Darevskia. All topologies altered the phylogenetic position of some individual species, including D. daghestanica, D. derjugini, and D. chlorogaster. Reanalysis after excluding four saturated genes from the data set, and excluding genus Eremias gives fully convergent topologies. The most basal branching for true lizards was between Far Eastern Takydromus and the Western Eurasian genera (BI). Comparing phylogenetic performance of individual genes relative to whole mitogenome data, concatenated 16S RNA (the least saturated gene in our analyses) and Cytochrome b genes generate a robust phylogeny that is fully congruent with that based on the complete mitogenome.

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Section: Genome Assemblymentioning

confidence: 99%

Phylogeny of caucasian rock lizards (Darevskia) and other true lizards based on mitogenome analysis: Optimisation of the algorithms and gene selection

et al. 2020

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“…The average coverage of reads aligned on the mitochondrial genome was 1053.1545. Then, we took a similar strategy to that in Chen et al (2019) to blast the mitogenome against the published reference sequences of Eremias multiocellata (accession number KM257724; Tong et al 2016) for comparison, alignment and annotation. Subsequently, the mitogenome was also annotated with MITOS Web Server (http:// mitos.bioinf.uni-leipzig.de/index.py; Bernt et al 2013).…”

mentioning

confidence: 99%

The complete mitochondrial genome of Eremias dzungarica (Reptilia, Squamata, Lacertidae) from the Junggar Basin in Northwest China

Wang

Liu

Zhang

et al. 2021

Mitochondrial DNA Part B

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The complete mitochondrial genome (mitogenome) of Eremias dzungarica from the Junggar Basin in Northwest China was determined for the first time by next-generation sequencing. The total length is 19,899 bp, containing13 protein-coding genes (PCGs), two ribosomal RNA genes, 22 transfer RNA genes and one control region. This gene arrangement is similar to the typical mtDNA of vertebrates. The 13 concatenated PCGs were used to perform Bayesian phylogenetic analyses together with several congeners as well as ten representative lacertids with mitogenome data available in GenBank. The resulting phylogenetic tree supports the monophyly of viviparous species in Eremias, with E. dzungarica being more closely related to E. przewalskii than to E. multiocellata. The mitogenome of E. dzungarica will provide fundamental data for the exploration of the mitogenome evolution in lacertids.

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“…Recently, several mitochondrial genome sequences of Eremias species have been reported (Du et al, 2014;Rui et al, 2009;Tong et al, 2014a), including E. vermiculata (Tong et al, 2014b) collected from the Taklamakan Desert, south of the Tianshan Mountains, Xinjiang (Long-Hui Lin, personal communication). In this study, we sequenced another complete mitogenome of E. vermiculata, with voucher number GUO3027.…”

mentioning

confidence: 99%

Complete mitogenome of a variegated racerunner, Eremias vermiculata , from north of Tianshan Mountains, Xinjiang, China

Zhou

Liu

Guo

2015

Mitochondrial DNA Part A

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The complete mitochondrial genome was determined from a variegated racerunner, Eremias vermiculata, which was collected from north of Tianshan Mountains, Xinjiang, China. The mitogenome sequence was 19,494 bp in size, containing 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a control region (D-loop), which is similar to the typical mtDNA of vertebrates. All the protein-coding genes in E. vermiculata were distributed on the H-strand, except the ND6 gene and eight tRNA genes, which were encoded on the L-strand. The mitogenome sequence herein will provide fundamental data for further investigating the phylogeographical pattern of E. vermiculata, along with testing the barrier effect of the Tianshan Mountains to gene flow. A preliminary phylogenetic inference has been implemented with five racerunner species and several other related lacertid species.

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The complete mitochondrial genome of Eremias multiocellata (Squamata: Lacertidae)

Cited by 4 publications

References 3 publications

Phylogeny of caucasian rock lizards (Darevskia) and other true lizards based on mitogenome analysis: Optimisation of the algorithms and gene selection

Phylogeny of caucasian rock lizards (Darevskia) and other true lizards based on mitogenome analysis: Optimisation of the algorithms and gene selection

The complete mitochondrial genome of Eremias dzungarica (Reptilia, Squamata, Lacertidae) from the Junggar Basin in Northwest China

Complete mitogenome of a variegated racerunner, Eremias vermiculata , from north of Tianshan Mountains, Xinjiang, China

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