The complete mitochondrial genome of <i>Lutjanus ophuysenii</i> and phylogenetic analysis

Sun, Peng; Jiang, Yazhou; Yuan, Xingwei; Zhang, Hui

doi:10.1080/23802359.2021.1951140

Cited by 2 publications

(2 citation statements)

References 6 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…Among the five species, the number of codon usage ranges from 3800 (P. auricilla, P. filamentosus, P. sieboldii) to 3803 (P. argyrogrammicus, P. zonatus). Leu (CUU, CUC, CUA, and CUG), Ala (GCU, GCC, GCA, and GCG), and Thr (ACU, ACC, ACA, and ACG) are the most frequently used amino acids, while Cys (UGU and UGC) is the least frequently used, similar to other species of the family Lutjanidae (Figure 4) [33,34]. The analysis of the relative synonymous codon usage (RSCU) indicates a preference for using A and C in the third position of codons (Figure 5).…”

Section: Protein Coding Genes and Codon Usagementioning

confidence: 82%

Phylogenetic Analyses of Pristipomoides (Perciformes: Lutjanidae) Based on New Mitochondrial Genomes

Liu,

Li,

Zhang

et al. 2023

Fishes

View full text Add to dashboard Cite

The species in the genus Pristipomoides are commercial fishes with high economic value. There are few studies on the phylogenetic relationship within the genus Pristipomoides at present. mtDNA has the characteristics of maternal inheritance, close gene arrangement, and a high evolutionary rate, which is an excellent tool to study the phylogeny of the species. In this study, the mitochondrial genomes of five species in the genus Pristipomoides were sequenced using the Sanger sequencing method and analyzed for their features. The mitochondrial genome length of the five species ranged from 16,499 to 16,530 bp. The start codon was ATG\GTG, and the stop codon was TAA\TAG\T--\AGG. The ratio of Ka and Ks for protein-coding genes ranged from 0 to 0.117, suggesting a strong purifying selection acting on the 13 protein-coding genes (PCGs). The gene with the highest diversity was nd2 (NADH dehydrogenase subunit 2), suggesting the highest evolutionary rate. Phylogenetic analysis of five Pristipomoides species with other species of Lutjanidae was conducted using maximum likelihood (ML) and Bayesian Inference (BI). The results showed that P. zonatus and P. auricilla were closely related to P. argyrogrammicus and P. sieboldii, respectively, and P. filamentosus and P. multidens clustered together. Furthermore, A. rutilans is deeply nested within the Pristipomoides genus, indicating a close phylogenetic relationship with the species in the Pristipomoides genus. Based on this evidence, we suggest that A. rutilans should be classified under the Pristipomoides genus and recommend a revision in its taxonomy. The molecular data and phylogenetic analysis provided in this study would be helpful for the species identification and phylogenetic studies of the family Lutjanidae.

show abstract

Section: Protein Coding Genes and Codon Usagementioning

confidence: 82%

Phylogenetic Analyses of Pristipomoides (Perciformes: Lutjanidae) Based on New Mitochondrial Genomes

Liu,

Li,

Zhang

et al. 2023

Fishes

View full text Add to dashboard Cite

show abstract

“… 2010 ), Lutjanus ophuysenii (MZ042266, Sun et al. 2021 ), Lutjanus peru (KR362299, Bayona-Vásquez et al. 2017 ), Lutjanus rivulatus (AP006000, Yamanoue et al.…”

Section: Methodsmentioning

confidence: 99%

Sequencing and analysis of the complete mitochondrial genome of Datnioides campbelli (Datnioididae)

Zhou

Yang

Liu

et al. 2022

Mitochondrial DNA Part B

View full text Add to dashboard Cite

In this study, the complete mitochondrial genome sequence of the New Guinea tiger fish Datnioides campbelli (Whitley 1938) (Lobotiformes: Datnioididae) was sequenced by next-generation sequencing method. The assembled mitochondrial genome consists of 13 protein-coding genes, 22 transfer RNA genes, and two ribosomal RNA genes, with a length of 16,416 bp. The total base composition of the mitogenome of D. campbelli was 29.31% for A, 29.02% for C, 15.14% for G and 26.54% for T. A phylogenetic tree based on 13 protein-coding genes (PCGs) provides important molecular data for further phylogeographic and evolutionary analysis of Lobotiformes.

show abstract

The complete mitochondrial genome of Lutjanus ophuysenii and phylogenetic analysis

Cited by 2 publications

References 6 publications

Phylogenetic Analyses of Pristipomoides (Perciformes: Lutjanidae) Based on New Mitochondrial Genomes

Phylogenetic Analyses of Pristipomoides (Perciformes: Lutjanidae) Based on New Mitochondrial Genomes

Sequencing and analysis of the complete mitochondrial genome of Datnioides campbelli (Datnioididae)

Contact Info

Product

Resources

About