The complete mitochondrial genome of
            <i>Eremias przewalskii</i>
            (Squamata: Lacertidae)

Du, Yuguang; Qiu, Qing-Bo; Tong, Qing-Lin; Li, Lin

doi:10.3109/19401736.2014.971286

Cited by 7 publications

(3 citation statements)

References 3 publications

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“…[35]). Mitogenomes of other species included in the analysis were: Podarcis muralis (Acc # NC011607, FJ460597; [15]), P. siculus (Acc # NC011609, FJ460598; [15]), Lacerta viridis (Acc # NC008328 [39]) L. agilis (Acc # NC021766, KC990830; Qin & Tao, unpublished), L. bilineata (Acc # KT722705, NC028440; [40], Takydromus tachydromoides (Acc # NC008773 [41], T. amurensis (Acc # NC030209, KU641018; [42]) T. sexlineatus (Acc # NC022703, KF425529 [43]), T. wolteri (Acc # NC018777, JX181764; [44]), Zootoca vivipara (Acc # NC026867 [45]) and Phoenicolacerta kulzeri (Acc # FJ460596 (16)), Eremias argus (Acc # IQ086345, NC016755; Kim et al, unpublished), E. multiocellata (Acc # KJ664798, KM257724; NC025304 [46]), E. przewalskii (Acc # KM507330, NC025929; [47]), E. stummeri (Acc # NC029878, KT372881; [48]) E. vermiculata (Acc # NC025320, KP981389, KM104865; [46]) (Acc # KP981388; [46]), and E. velox (Acc # KM359148; [48] E. brenchleyi (Acc # EF490071; NC011764 Rui et al, unpublished).…”

Section: Genome Assemblymentioning

confidence: 99%

“…For comparison of the phylogenetic performance of individual parts of the mitogenome, we separately reconstructed phylogenies of the following individual genes or groups of genes: 1) the thirteen mitochondrial protein coding genes, 2) concatenated tRNAs and 3) ribosomal (12S and 16S) RNA genes. In squamate species' control region, mtDNA has heterogeneous base composition and long insertions and therefore shows biased phylogenetic signal [39,47,49,50], hence we excluded these segments from our data set. For determining the best substitution models, we analysed each protein coding gene for 1st, 2nd and 3rd codon positions with PartitionFinder v.2.…”

Section: Genome Assemblymentioning

confidence: 99%

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Phylogeny of caucasian rock lizards (Darevskia) and other true lizards based on mitogenome analysis: Optimisation of the algorithms and gene selection

et al. 2020

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We generated a phylogeny for Caucasian rock lizards (Darevskia), and included six other families of true lizards (Lacertini), based on complete mitochondrial genome analysis. Nextgeneration sequencing (NGS) of genomic DNA was used to obtain 16 new mitogenomes of Darevskia. These, along with 35 sequences downloaded from GenBank: genera Darevskia, Zootoca, Podarcis, Phoenicolacerta, Takydromus, Lacerta, and Eremias-were used in the analysis. All four analytical methods (Bayesian Inference, BI; Maximum Likelihood, ML; Maximum Parsimony, MP; and Neighbor-Joining, NJ) showed almost congruent intrageneric topologies for Darevskia and other lizard genera. However, ML and NJ methods on one side, and BI and MP methods on the other harvested conflicting phylogenies. The ML/ NJ topology supports earlier published separation of Darevskia into three mitochondrial clades (Murphy, Fu, Macculloch, Darevsky, and Kupinova, 2000), but BI and MP topologies support that the basal branching occurred between D. parvula from the western Lesser Caucasus and the rest of Darevskia. All topologies altered the phylogenetic position of some individual species, including D. daghestanica, D. derjugini, and D. chlorogaster. Reanalysis after excluding four saturated genes from the data set, and excluding genus Eremias gives fully convergent topologies. The most basal branching for true lizards was between Far Eastern Takydromus and the Western Eurasian genera (BI). Comparing phylogenetic performance of individual genes relative to whole mitogenome data, concatenated 16S RNA (the least saturated gene in our analyses) and Cytochrome b genes generate a robust phylogeny that is fully congruent with that based on the complete mitogenome.

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Section: Genome Assemblymentioning

confidence: 99%

Section: Genome Assemblymentioning

confidence: 99%

Phylogeny of caucasian rock lizards (Darevskia) and other true lizards based on mitogenome analysis: Optimisation of the algorithms and gene selection

et al. 2020

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“…Recently, several mitochondrial genome sequences of Eremias species have been reported (Du et al, 2014;Rui et al, 2009;Tong et al, 2014a), including E. vermiculata (Tong et al, 2014b) collected from the Taklamakan Desert, south of the Tianshan Mountains, Xinjiang (Long-Hui Lin, personal communication). In this study, we sequenced another complete mitogenome of E. vermiculata, with voucher number GUO3027.…”

mentioning

confidence: 99%

Complete mitogenome of a variegated racerunner, Eremias vermiculata , from north of Tianshan Mountains, Xinjiang, China

Zhou

Liu

Guo

2015

Mitochondrial DNA Part A

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The complete mitochondrial genome was determined from a variegated racerunner, Eremias vermiculata, which was collected from north of Tianshan Mountains, Xinjiang, China. The mitogenome sequence was 19,494 bp in size, containing 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a control region (D-loop), which is similar to the typical mtDNA of vertebrates. All the protein-coding genes in E. vermiculata were distributed on the H-strand, except the ND6 gene and eight tRNA genes, which were encoded on the L-strand. The mitogenome sequence herein will provide fundamental data for further investigating the phylogeographical pattern of E. vermiculata, along with testing the barrier effect of the Tianshan Mountains to gene flow. A preliminary phylogenetic inference has been implemented with five racerunner species and several other related lacertid species.

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Effects of habitat fragmentation on the genetic diversity and differentiation of Dendrolimus punctatus (Lepidoptera: Lasiocampidae) in Thousand Island Lake, China, based on mitochondrial COI gene sequences

Wang

et al. 2018

Bull. Entomol. Res.

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Thousand Island Lake (TIL) is a typical fragmented landscape and an ideal model to study ecological effects of fragmentation. Partial fragments of the mitochondrial cytochrome oxidase subunit I gene of 23 island populations of Dendrolimus punctatus in TIL were sequenced, 141 haplotypes being identified. The number of haplotypes increased significantly with the increase in island area and shape index, whereas no significant correlation was detected between three island attributes (area, shape and isolation) and haplotype diversity. However, the correlation with number of haplotypes was no longer significant when the 'outlier' island JSD (the largest island) was not included. Additionally, we found no significant relationship between geographic distance and genetic distance. Geographic isolation did not obstruct the gene flow among D. punctatus populations, which might be because of the high dispersal capacity of this pine moth. Fragmentation resulted in the conversion of large and continuous habitats into isolated, small and insular patches, which was the primary effect on the genetic diversity of D. punctatus in TIL. The conclusion to emphasize from our research is that habitat fragmentation reduced the biological genetic diversity to some extent, further demonstrating the importance of habitat continuity in biodiversity protection.

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The complete mitochondrial genome of Eremias przewalskii (Squamata: Lacertidae)

Cited by 7 publications

References 3 publications

Phylogeny of caucasian rock lizards (Darevskia) and other true lizards based on mitogenome analysis: Optimisation of the algorithms and gene selection

Phylogeny of caucasian rock lizards (Darevskia) and other true lizards based on mitogenome analysis: Optimisation of the algorithms and gene selection

Complete mitogenome of a variegated racerunner, Eremias vermiculata , from north of Tianshan Mountains, Xinjiang, China

Effects of habitat fragmentation on the genetic diversity and differentiation of Dendrolimus punctatus (Lepidoptera: Lasiocampidae) in Thousand Island Lake, China, based on mitochondrial COI gene sequences

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