Pedodiversity is considered the cornerstone of biodiversity. This work aimed to (1) assess pedodiversity according to vegetation, topographic factors, and lithology and to (2) identify the major soil-forming factors on soil organic matter (SOM) stock at a 0–30 cm depth. These goals were reached using data from 147 georeferenced soil profiles distributed along 400–1000 m (≤1000) and 1000–2134 m (>1000) altitudinal gradients in the northern part of the Apennine chain in Italy. Soils showed mainly weak or incipient development (i.e., Entisols and Inceptisols), which could be attributed to sand-based lithology, high slope gradients, and low SOM accumulation rates, which promote soil erosion processes. However, higher pedodiversity was observed at >1000 m than at ≤1000 m, likely due to the higher vegetation cover diversity and climate variability; Spodosols and Mollisols were also found. A greater SOM stock was found at >1000 than ≤1000 m, and vegetation seemed to not affect SOM amounts, suggesting a greater influence of climate on SOM content compared to vegetation. Considering ecosystem conservation, the observed spatial pedodiversity could be considered a critical basis for the protection of soil resources and pedodiversity itself in mountain regions.