USP5 disassembles unanchored polyubiquitin chains to recycle free mono-ubiquitin, and is one of twelve ubiquitin-specific proteases featuring a zinc finger ubiquitin-binding domain (ZnF-UBD). This distinct structural module has been associated with substrate positioning or allosteric modulation of catalytic activity, but its cellular function remains unclear. We screened a chemical library focused on the ZnF-UBD of USP5, crystallized hits in complex with the protein, and generated a preliminary structure-activity relationship which enables the development of more potent and selective compounds. This work serves as a framework for the discovery of a chemical probe to delineate the function of USP5 ZnF-UBD in proteasomal degradation and other ubiquitin signalling pathways in health and disease. Corresponding Authors Author Contributions M.M. and M.S. wrote the manuscript. I.F. and R.F.F. completed preliminary docking studies. R.H., and M.M. performed the crystallographic calculations and model refinement for X-ray crystal structures with 1, 5, and 7. W.T. performed the crystallographic calculations and model refinement of X-ray structure with compound 21. M.M. and S.H tested compounds. M.M. completed hit expansion. C.H.A, R.H. and M.S. advised throughout the project.
Notes:The authors declare no competing financial interest.