Context Biodiversity and ecosystem functioning underpins the delivery of all ecosystem services and should be accounted for in all decision-making related to the use of natural resources and areas. However, biodiversity and ecosystem services are often inadequately accounted for in land use management decisions. Objective We studied a boreal forest ecosystem by linking citizen-science bird data with detailed information on forest characteristics from airborne laser scanning (ALS). In this paper, we describe this method, and evaluate how similar kinds of biological data sets combined with remote sensing can be used for ecosystem assessments at landscape scale. Methods We analysed data for 41 boreal forest bird species and for 14 structural ALS-based forest parameters.Results The results support the use of the selected method as a basis for quantifying spatially-explicit biodiversity indicators for ecosystem assessments, while suggestions for improvements are also reported. Finally, we evaluate the capacity of those indicators to describe biodiversity-ecosystem service relationships, for example with carbon trade-offs. The results showed clear distinctions between the different species as measured, for example, by above-ground forest biomass at the observation sites. We also assess how Electronic supplementary material The online version of this article