We utilized molecular dynamics simulations to investigate the effects of single vacancy defects on the oscillation property of graphene nano-resonators. Single vacancies, representative point defects, are generated and unavoidable in the structure of graphene resonator during its synthesis process. We found that single vacancies deteriorate significantly the oscillation quality of the graphene resonator because of the softening of the local stiffness near single vacancies. The quality (Q) factor decreases monotonously as the concentration of single vacancy defects increases. We also found that thermal fluctuation at higher temperature accelerates the reduction of the Q factor of graphene resonators at the presence of single vacancies. At low temperature the softening effect due to single vacancies is dominant for the reduction of the Q factor of graphene resonators, while the thermal fluctuation in the out-of-plane direction becomes more dominant at high temperature. Moreover, the reduction rate of the Q factor with the increase of single vacancy concentration becomes smaller and thus less significant as temperature increases.