Clostridium perfringens causes necrotic enteritis in chickens, and alpha-toxin has been suggested to be a key virulence determinant. Analysis of the alpha-toxin of 25 chicken-derived C. perfringens strains demonstrated high homology to mammal-derived strains rather than to the only avian-derived C. perfringens alpha-toxin sequence reported previously.Clostridium perfringens is a widely distributed pathogen (6) commonly isolated from the environment and the gastrointestinal tract of birds and mammals (7,24). C. perfringens isolates are classified into five types (A to E) according to the production of four major toxins (alpha, beta, epsilon, and iota) (11, 13). The alpha-toxin has been implicated in several diseases (18), including necrotic enteritis in chickens (3, 10). The alphatoxin structural gene (plc or cpa) has been isolated from several strains of C. perfringens and characterized (4), and the encoded proteins were found to be highly conserved in all but one recently identified strain (8). This strain (SWCP) was isolated from a diseased swan. Justin et al. (8) found that the SWCP alpha-toxin had only 80% amino acid sequence identity to the other C. perfringens alpha-toxins and questioned if this difference in sequence was typical of all avian isolates. In this study, we examined the alpha-toxin sequences encoded by a range of isolates of C. perfringens derived from chickens to determine if the divergent SWCP alpha-toxin sequence is common in avian isolates.The C. perfringens strains used in this study (Table 1) were isolated from chickens displaying clinical signs of necrotic enteritis (1). Genomic DNA was prepared as the template for PCR by boiling crude cells in water for 3 min. The PCR conditions and reaction concentrations were as described before (14). Two PCR products, together encompassing the complete plc gene, were amplified from each of the 25 strains and sequenced to determine the amino acid sequence of the encoded alpha-toxin (Fig. 1). In each isolate, the full-length sequence was predicted to have 398 amino acids. The toxins were all highly conserved in amino acid sequence (Fig. 2), and only five different alpha-toxin sequence types (I to V) were identified among the 25 isolates sampled from several different outbreaks of necrotic enteritis in different locations (Table 1). Each alpha-toxin gene was sequenced twice with independently generated templates to confirm that the changes were not due to sequencing or PCR errors. All the alpha-toxin sequence types from the chicken isolates closely resembled that of the toxin from the human isolate, strain 13 (20), with greater than 98% identity, but differed considerably from the swan isolate (SWCP), with only 82 to 84% identity. The SWCP isolate has between 67 and 70 amino acid differences from the chicken isolates, and of all the changes in the SWCP sequence, only two amino acid changes are found in the field isolates reported here.Sequence type I has only one amino acid difference from the strain 13 sequence and was the most common alpha-toxin fou...