Polycystic ovary syndrome (PCOS), the most common form of anovulatory infertility, is associated with altered signalling within the hormone-sensitive neuronal network that regulates gonadotropin-releasing hormone (GnRH) neurons, leading to a pathological increase in GnRH secretion. Circuit remodelling is evident between GABAergic neurons in the arcuate nucleus (ARN) and GnRH neurons in a murine model of PCOS. One third of ARN GABA neurons co-express neuropeptide Y (NPY), which has a known yet complex role in regulating GnRH neurons and reproductive function. Here, we investigated whether the NPY-expressing subpopulation (NPY ARN) of ARN GABA neurons (GABA ARN) is also affected in prenatally androgenized (PNA) PCOS-like NPY ARN reporter mice [Agouti-related protein (AgRP)-Cre;τGFP]. PCOS-like mice and controls were generated by exposure to di-hydrotestosterone or vehicle (VEH) in late gestation. τGFP-expressing NPY ARN neuron fiber appositions with GnRH neurons and gonadal steroid hormone receptor expression in τGFP-expressing NPY ARN neurons were assessed using confocal microscopy. Although GnRH neurons received abundant close contacts from τGFP-expressing NPY ARN neuron fibers, the number and density of putative inputs was not affected by prenatal androgen excess. NPY ARN neurons did not co-express progesterone receptor or estrogen receptor α in either PNA or VEH mice. However, the proportion of NPY ARN neurons co-expressing the androgen receptor was significantly elevated in PNA mice. Therefore, NPY ARN neurons are not remodelled like the wider GABA ARN population by prenatal androgen excess, indicating GABA-to-GnRH neuron circuit remodelling occurs in a presently unidentified non-NPY/AgRP population of GABA ARN neurons. NPY ARN neurons do, however, show independent changes in the form of elevated androgen sensitivity