In the nacre or aragonite layer of the mollusk shell there exist proteomes which regulate both the early stages of nucleation and nano-to-mesoscale assembly of nacre tablets from mineral nanoparticle precursors. Several approaches have been developed to understand protein-associated mechanisms of nacre formation, yet we still lack insight into how protein ensembles or proteomes manage nucleation and crystal growth. To provide additional insights we have created a proportionally-defined combinatorial model consisting of two nacre-associated proteins, C-RING AP7 (shell nacre, H. rufescens) and pseudo-EF hand PFMG1 (oyster pearl nacre, P. fucata) whose individual in vitro mineralization functionalities are well-documented and distinct from one another. Using SEM, flow cell STEM, AFM, Ca(II) potentiometric titrations and QCM-D quantitative analyses, we find that both nacre proteins are functionally active within the same mineralization environments, and at 1:1 mole ratios, synergistically create calcium carbonate mesoscale structures with ordered intracrystalline nanoporosities, extensively prolong nucleation times and introduce an additional nucleation event. Further, these two proteins jointly create nanoscale protein aggregates or phases that under mineralization conditions further assemble into protein-mineral PILP-like phases with enhanced ACC stabilization capabilities, and there is evidence for intermolecular interactions between AP7 and PFMG1 under these conditions. Thus, a combinatorial model system consisting of more than one defined biomineralization protein dramatically changes the outcome of the in vitro biomineralization process.