Protamines P1 and P2 form a family of small basic peptides that represent the major sperm proteins in placental mammals. In human and mouse protamine P2 is one of the most abundant sperm proteins. The protamine P2 gene codes for a P2 precursor, pro-P2 which is later processed by proteolytic cleavages in its N-terminal region to form the mature P2 protamines. We have used polymerase chain amplification to directly sequence the pro-P2 genes of the five major primate families: red howler (Alouattu seniculus) is a New World monkey (Cebidae); the two macaque species, Macucu muluttu and M. nemistrinu are Old World monkeys (Cercopithecidae), the gibbon, Hylobutes lur, represents one branch of the apes (Hylobatidae); the orangutan, Pongo pygmueus, gorilla, Gorilla gorilla and two species of chimpanzee Pun paniscus and Pun troglodytes represent a second ape family (Pongidae). These pro-P2 genes are compared with that of human [Domenjoud, L., Nussbaum, G., Adham, I. M., Greeske, G. & Engel, W. (1990) Genomics 8, 127-1331.The overall size and organization of the genes are conserved within the group. The mean length of pro-P2 is 101 residues, with an increase to 102 in M. nemistrinu and a decrease to 99 residues in red howler (A. seniculus). In gorilla and red howler one of two 79-bp tandem repeats that occurs 3' of the gene is deleted. Of the 101 deduced amino acids examined, an amino acid change occurs in one or more primates at 45 positions. Considering only the most recently diverged group, the human/gorilla/chimpannzee clade, this represents a very high mutation rate of 0.99 changes/100 sites in lo6 years. This rapid mutation rate is characteristic of both members of the protamine gene family, P1 and P2. Consideration of the variable nature of the sequences at the multiple sites of proteolysis during the processing of the pro-P2 indicates either that there are several processing enzymes of differing specificities, or more likely that the folded structure of the pro-P2 limits accessibility of a non-specific protease to certain exposed sites.In the majority of placental mammals the major sperm basic protein is protamine 1, a small, highly arginine-rich protein of 50-52 residues (for review see [l]). However, in primates and a very limited number of rodents (typically, mouse), a second sperm protamine, P2, comprises a major portion of the total sperm protamine [2, 31. There are significant differences in the structures and synthesis of P1 and P2 in the mouse [4]. Protamine P2 is synthesized as a 106-amino-acid precursor, pro-P2, which is subsequently processed to the mature 63-residue P2 by removal of its N-terminal leader peptide of 43 residues via a series of intermediate proteins [ 5 ] . In contrast, protamine P1 is not processed. The major qualitative difference between P1 and P2 is the presence of 8 or 9 His residues in human P2 [2], compared to a single one in human P1. There are 12 or 13 His in mouse P2, but none in mouse P1 [3]. Human P2 exists in two major forms in mature sperm, HP2a and HP2b, differing by the pr...