“…In all these studies, an ideal control is used to subject animals only to the context (CTX), without applying a foot shock. Next, hippocampal or cortical tissue (i.e., to address long-term memory storage; see [ 87 ]) are obtained across different phases of CFC and subsequently analyzed to identify relevant changes within the transcriptomic profile by high-throughput RNA sequencing (RNA-seq), in the epigenomic landscape (e.g., by Chromatin immunoprecipitation coupled with high-throughput sequencing (ChIP-seq and Methylated DNA immunoprecipitation and sequencing (MeDIP-seq)), in chromatin accessibility (e.g., by the Assay for Transposase-Accessible Chromatin and sequencing (ATAC-seq)) and in the chromatin 3D organization using Chromatin-Conformation-Capture-based approaches (e.g., Hi-C). ChIP-seq data can also be used to identify putative active promoters (enriched in H3K4me3, H3K9ac, H3K27ac, H3K79me3), primed enhancers (enriched in H3K4me1), active enhancers (enriched in H3K27ac and H3K4me1) together with transcriptionally repressed genomic regions (enriched in H3K9me3, H3K27me3 and 5mCpG).…”