The molecular characterization of complete mitochondrial genome of spotted snakehead fish, <i>Channa punctata</i> (Bloch 1793)

Alam, Md. Jobaidul; Andriyono, Sapto; Sektiana, Sinar Pagi; Rahman, Mofizur; Kim, Hyun-Woo

doi:10.1080/23802359.2018.1553520

Cited by 4 publications

(2 citation statements)

References 4 publications

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“…; Alam et al. [14] , [15] , [16] . The raw reads were cleaned by the trimming of adaptor sequences, empty reads, and ambiguous nucleotides (‘N’ at the end of the reads).…”

Section: Experimental Design Materials and Methodsmentioning

confidence: 99%

New complete mitogenome datasets and their characterization of the European catfish (Silurus glanis)

et al. 2021

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We present new complete mitogenome sequences of Silurus glanis (S. glanis) from 4 samples such as male and female individuals from two countries (Hungary, Czech Republic). The complete mitochondria were determined from genome sequencing by using Illumina MiSeq platform resulting in long, 300 bp. paired-end reads. De novo assembly was performed resulting in one nod (scaffold) covering the total mitochondria in each sample. The mitochondrial genomes were circular, double-stranded molecules of 16,524 bp in length and consisted of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region. These sequences were deposited in the NCBI GeneBank under the accession numbers (MW796040, MW796041, MW796042, MW796043) and compared with the only available S. glanis mitochondrial genome (NC_014261.1) sequenced by unidentified technology and showed 99% similarity. We found in seq1 82, in seq2 82, seq3 83, seq4 82 nucleotide alterations involving 10 protein-coding genes and meaning 29 amino acid substitutions as well.

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“…; Alam et al. [14] , [15] , [16] . The raw reads were cleaned by the trimming of adaptor sequences, empty reads, and ambiguous nucleotides (‘N’ at the end of the reads).…”

Section: Experimental Design Materials and Methodsmentioning

confidence: 99%

New complete mitogenome datasets and their characterization of the European catfish (Silurus glanis)

et al. 2021

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“…Channa punctata is distributed in swamps, ponds and ditches and as adults in muddy streams and stagnant water bodies ( Alam et al, 2019 ). Channa spp.…”

Section: Introductionmentioning

confidence: 99%

Genetic characterisation of Tanqua (von Linstow, 1879) (Nematoda: Gnathostomatidae) larval forms including new host and locality records

Williams

Hernández‐Jover

Hossen

et al. 2022

International Journal for Parasitology: Parasites and Wildlife

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In an unrelated study of spotted snakehead fish Channa punctata (Bloch) of family Channidae (N = 103) from Bangladesh, ten fish had taupe and clear coloured cysts attached to the intestinal mesentery. Investigation of the cysts revealed larval nematodes. The larvae were damaged and not suitable for detailed morphological study, however, key features such as tooth like projections of the pseudolabia and lateral pseudolabium were observed in specimens with undamaged cephalic regions. Molecular characterisation was undertaken and although the parasite genetic material was poor, five of the twelve nematode larvae through sequencing of the 18S ribosomal RNA gene, showed 98.17% match with sequences assigned for Tanqua tiara (accession number JF934728) deposited in GenBank. The prevalence of infection was 9.7% and the mean intensity 2.70. Tanqua has not previously been identified in fish, or from the definitive host, the Asian water monitor Varanus salvator (Laurenti, 1768) of family Varanidae (class Reptilia), in Bangladesh. Therefore, this study represents a new host and locality record for this nematode species. In many previous reports from this region, nematode larvae have been identified morphologically and assigned to a diverse range of nematode genera. Some confusion therefore exists regarding their accuracy and further investigations are required using molecular methodology to clarify the species of larval nematodes which infect edible fish in Bangladesh.

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Comparative mitochondrial genomics and phylogenetics for species of the snakehead genus Channa Scopoli, 1777 (Perciformes: Channidae)

Wang

Liu

et al. 2023

Gene

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The molecular characterization of complete mitochondrial genome of spotted snakehead fish, Channa punctata (Bloch 1793)

Cited by 4 publications

References 4 publications

New complete mitogenome datasets and their characterization of the European catfish (Silurus glanis)

New complete mitogenome datasets and their characterization of the European catfish (Silurus glanis)

Genetic characterisation of Tanqua (von Linstow, 1879) (Nematoda: Gnathostomatidae) larval forms including new host and locality records

Comparative mitochondrial genomics and phylogenetics for species of the snakehead genus Channa Scopoli, 1777 (Perciformes: Channidae)

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