Papillomavirus DNA replication occurs in the nucleus of infected cells and requires the viral E1 protein, which enters the nuclei of host epithelial cells and carries out enzymatic functions required for the initiation of viral DNA replication. In this study, we investigated the pathway and regulation of the nuclear import of the E1 protein from bovine papillomavirus type 1 (BPV1). Using an in vitro binding assay, we determined that the E1 protein interacted with importins ␣3, ␣4, and ␣5 via its nuclear localization signal (NLS) sequence. In agreement with this result, purified E1 protein was effectively imported into the nucleus of digitonin-permeabilized HeLa cells after incubation with importin ␣3, ␣4, or ␣5 and other necessary import factors. We also observed that in vitro binding of E1 protein to all three ␣ importins was significantly decreased by the introduction of pseudophosphorylation mutations in the NLS region. Consistent with the binding defect, pseudophosphorylated E1 protein failed to enter the nucleus of digitonin-permeabilized HeLa cells in vitro. Likewise, the pseudophosphorylation mutant showed aberrant intracellular localization in vivo and accumulated primarily on the nuclear envelope in transfected HeLa cells, while the corresponding alanine replacement mutant displayed the same cellular location pattern as wild-type E1 protein. Collectively, our data demonstrate that BPV1 E1 protein can be transported into the nucleus by more than one importin ␣ and suggest that E1 phosphorylation by host cell kinases plays a regulatory role in modulating E1 nucleocytoplasmic localization. This phosphoregulation of nuclear E1 protein uptake may contribute to the coordination of viral replication with keratinocyte proliferation and differentiation.Papillomaviruses are the etiological agents involved in several human cancers such as cervical cancer, anogenital cancer, skin cancer, and cancers of the oral cavity, the larynx, and the esophagus (68). In addition to their importance in clinical disease, papillomaviruses have provided a valuable model system for analyzing the mechanisms regulating eukaryotic DNA replication. The viral E1 protein is the largest open reading frame and is highly conserved among all papillomaviruses, maintaining its size, amino acid composition, and location in the viral genome with respect to other early genes. The E1 protein is expressed during the early stage of virus infection in order to maintain the viral DNA as an episome. The multifunctional E1 protein recognizes and binds to the viral origin of replication in combination with the viral protein E2, recruits host cell replication proteins to the origin, and initiates DNA replication via its ATP-dependent helicase activity (60, 61).Papillomavirus infection is established in the basal layer of the epithelium, and the complex viral life cycle is coordinated with the differentiation state of the epithelium (13, 14). There are three distinct modes of viral DNA replication: (i) transient amplification, which occurs immediately upon ...