The aim of this study was the development of an eco-friendly dye that may be used in furniture, woodworking, and upper surface treatment, with no ill effects to human health. The plant dyestuff was extracted from pomegranate skin (Punica granatum) and black mulberry (Morus nigra) using an ultrasonic method at different rates. The extraction percentage ratios were, by weight in distilled water, 25%, 30%, 35%, 40%, 45%, and 50% and were applied to Scotch pine (Pinus sylvestris L.) and Oriental beech (Fagus orientalis L.) through an immersion method. After that, the determination of color change under the accelerated weathering conditions and the feasibility as the upper surface stain of this dyestuff were studied. The values of total color change of the natural dye samples that were applied to the test material were determined after accelerated weathering processes lasting 50, 100, and 150 h, according to ISO 2470. The results showed the best color stability in Oriental beech wood that was treated with 30% pomegranate skin or black mulberry extract as well as Scotch pine wood that was treated with 25% pomegranate skin extract or 50% black mulberry extract. Exactly the same ΔE* values were obtained with the same dyestuff and same wood type, indicating close color stability behaviors. According to the results, both pomegranate skin (Punica granatum) and black mulberry (Morus nigra) can be used to color wood materials.