Pythium guiyangense
, an oomycete from a genus of mostly plant pathogens, is an effective biological control agent that has wide potential to manage diverse mosquitoes. However, its mosquito-killing mechanisms are almost unknown. In this study, we observed that
P
.
guiyangense
could utilize cuticle penetration and ingestion of mycelia into the digestive system to infect mosquito larvae. To explore pathogenic mechanisms, a high-quality genome sequence with 239 contigs and an N50 contig length of 1,009 kb was generated. The genome assembly is approximately 110 Mb, which is almost twice the size of other sequenced
Pythium
genomes. Further genome analysis suggests that
P
.
guiyangense
may arise from a hybridization of two related but distinct parental species. Phylogenetic analysis demonstrated that
P
.
guiyangense
likely evolved from common ancestors shared with plant pathogens. Comparative genome analysis coupled with transcriptome sequencing data suggested that
P
.
guiyangense
may employ multiple virulence mechanisms to infect mosquitoes, including secreted proteases and kazal-type protease inhibitors. It also shares intracellular Crinkler (CRN) effectors used by plant pathogenic oomycetes to facilitate the colonization of plant hosts. Our experimental evidence demonstrates that CRN effectors of
P
.
guiyangense
can be toxic to insect cells. The infection mechanisms and putative virulence effectors of
P
.
guiyangense
uncovered by this study provide the basis to develop improved mosquito control strategies. These data also provide useful knowledge on host adaptation and evolution of the entomopathogenic lifestyle within the oomycete lineage. A deeper understanding of the biology of
P
.
guiyangense
effectors might also be useful for management of other important agricultural pests.