Limited findings have been reported on using nanomaterials to improve tree fruit growth, development, and productivity under various stress conditions. To assess the effect of nanoparticles (NPs) like nano-zinc oxide (nZnO) and nano-silicon (nSi) on mango tree growth, yield, and fruit quality under salinity conditions, a factorial experiment was conducted using twelve treatments; three replicates each. Foliar spray of nZnO (50, 100, and 150 mg/L), nSi (150 and 300 mg/L), their combinations, and distilled water as a control was applied at full bloom and one month after of salt-stressed “Ewais” mango trees. Trees positively responded to different levels of nZnO and nSi. Plant growth, nutrients uptake, and carbon assimilation have improved with all treatments, except the higher concentration of nSi. Plant response to stress conditions was represented by a high level of proline content with all treatments, but changes in the activity of the antioxidant enzymes were positively related to the lower and medium concentrations of NPs. Flower malformation has significantly decreased, and the annual fruit yield and physiochemical characteristics have improved with all treatments. It could be recommended that a combination of 100 mg/L nZnO and 150 mg/L nSi improves mango tree resistance, annual crop load, and fruit quality under salinity conditions.