Chitin is a major component of fungal walls and insect exoskeletons. Plants produce chitinases upon pathogen attack and chito-oligomers induce defense responses in plants, though the exact mechanism behind this response is unknown. Using the ATH1 Affymetrix microarrays consisting of about 23,000 genes, we examined the response of Arabidopsis (Arabidopsis thaliana) seedlings to chito-octamers and hydrolyzed chitin after 30 min of treatment. The expression patterns elicited by the chitooctamer and hydrolyzed chitin were similar. Microarray expression profiles for several genes were verified via northern analysis or quantitative reverse transcription-PCR. We characterized T-DNA insertion mutants for nine chito-oligomer responsive genes. Three of the mutants were more susceptible to the fungal pathogen, powdery mildew, than wild type as measured by conidiophore production. These three mutants included mutants of genes for two disease resistance-like proteins and a putative E3 ligase. The isolation of loss-of-function mutants with enhanced disease susceptibility provides direct evidence that the chito-octamer is an important oligosaccharide elicitor of plant defenses. Also, this study demonstrates the value of microarray data for identifying new components of uncharacterized signaling pathways.Plants in the environment are constantly under siege by a multitude of disease-causing organisms including bacteria, fungi, viruses, and nematodes. Plants may resist pathogen attack using both preformed defenses (e.g. antimicrobial compounds) and inducible defense responses (for review, see HammondKosack and Jones, 2000;Heath, 2000). Inducible defenses can be activated upon recognition of general elicitors such as bacterial flagellin (Gomez-Gomez and Boller, 2002), the polypeptide systemin (Ryan and Pearce, 1998), and multiple host or pathogen cell wall fragments released during pathogen attack (Nü rnberger et al., 2004). Recently, oligosaccharide elicitors such as chito-oligomers and oligogalacturonides have received renewed attention as important signals in plant defense responses. The activation of defense genes by these elicitors is thought to be receptor-mediated though little is known about the initial perception and consequent signaling pathways involved in plant cells.Chito-oligosaccharides can be generated from the cell walls of pathogenic fungi by the action of endochitinases and were shown to elicit strong defense responses in many plant species (Stacey and Shibuya, 1997;Shibuya and Minami, 2001). In a previous study, we showed that transcript levels for 71 expressed sequence tags, representing 61 genes, were altered more than 3-fold in chito-oligomer treated Arabidopsis (Arabidopsis thaliana) seedlings, demonstrating the usefulness of Arabidopsis as a model for studying chitin signaling in plants . Further experimentation by Zhang et al. (2002) showed that this response was not mediated by the well-characterized salicylic acid, jasmonic acid, or ethylene-responsive plant defense pathways. More recently, Wan et al. (...