impact protein function and localization, largely via modulating membrane affi nity and protein stability (7)(8)(9). In contrast to the stable thioether linkage of S -prenylation, the thioester linkage of S -acylation confers a reversible and dynamic nature on this modifi cation, and many recent efforts are shedding light on how this modifi cation is regulated ( 8-11 ).There are a variety of methodologies to detect protein S -acylation/palmitoylation in intact cells. A well-established method involves incubating cells with 3 H-labeled palmitate, followed by autoradiography to visualize the degree of isotopic incorporation. However, this approach requires high levels of [ 3 H]palmitate (as many as several mCi per sample) and exposure times on the order of weeks ( 12, 13 ). More recent methods have cleverly circumvented these issues by using nonradioactive derivatives of palmitate, which can be enriched or detected via cycloaddition reactions ( "click chemistry") ( 14-17 ). Nonetheless, these "palmitate-centric" approaches are encumbered by i ) the need for radioactive or chemically modifi ed palmitate analogs; ii ) the likely bias for proteins that undergo rapid palmitate turnover versus proteins that are more stably palmitoylated; iii ) diffi culty in detecting individual S -acylated proteins or their specifi c sites of S -acylation; and iv ) the inability to detect proteins that are acylated with moieties other than palmitate (e.g., shorter, longer, or unsaturated lipid chains).Recently, a "cysteine-centric" approach to identify S -acylated proteins was introduced that uses the conversion of the protein thioester to a disulfi de-linked biotin ( 18, 19 ). This assay, known as acyl-biotin exchange (ABE), is readily Abstract Protein S -acylation is a major posttranslational modifi cation whereby a cysteine thiol is converted to a thioester. A prototype is S -palmitoylation (fatty acylation), in which a protein undergoes acylation with a hydrophobic 16 carbon lipid chain. Although this modifi cation is a well-recognized determinant of protein function and localization, current techniques to study cellular S -acylation are cumbersome and/or technically demanding. We recently described a simple and robust methodology to rapidly identify S -nitrosylation sites in proteins via resin-assisted capture (RAC) and provided an initial description of the applicability of the technique to S -acylated proteins (acyl-RAC). Here we expand on the acyl-RAC assay, coupled with mass spectrometry-based proteomics, to characterize both previously reported and novel sites of endogenous S -acylation. Acyl-RAC should therefore fi nd general applicability in studies of both global and individual protein S -acylation in mammalian cells.
Supplementary key words acylation • H-Ras • lipid • palmitoylation • proteomicsProtein cysteine residues undergo a wide variety of chemical reactions owing to thiol nucleophilicity and redox reactivity. These reactions include S -nitrosylation ( 1, 2 ), S -prenylation ( 3, 4 ), and S -acylation ( 5, 6 ), wh...