The intracellular free calcium concentration subserves complex signaling roles in brain. Calcium cations (Ca 2+ ) regulate neuronal plasticity underlying learning and memory and neuronal survival. Homo-and heterocellular control of Ca 2+ homeostasis supports brain physiology maintaining neural integrity. Ca 2+ fluxes across the plasma membrane and between intracellular organelles and compartments integrate diverse cellular functions. A vast array of checkpoints controls Ca 2+ , like G protein-coupled receptors, ion channels, Ca 2+ binding proteins, transcriptional networks, and ion exchangers, in both the plasma membrane and the membranes of mitochondria and endoplasmic reticulum. Interactions between Ca 2+ and reactive oxygen species signaling coordinate signaling, which can be either beneficial or detrimental. In neurodegenerative disorders, cellular Ca 2+ -regulating systems are compromised. Oxidative stress, perturbed energy metabolism, and alterations of disease-related proteins result in Ca 2+ -dependent synaptic dysfunction, impaired plasticity, and neuronal demise. We review Ca 2+ control processes relevant for physiological and pathophysiological conditions in brain tissue.