Transcriptional profiling of Pseudomonas aeruginosa grown under steady-state hyperosmotic stress conditions showed an up-regulation of genes associated with osmoprotectant synthesis, putative hydrophilins, and the type III secretion system with associated cytotoxins. A large number of regulatory genes, including several two-component systems not previously known to be influenced by osmolarity, were differentially expressed by P. aeruginosa in immediate response to hyperosmotic shock.Changes in osmolarity are likely an inescapable reality for microbes colonizing any environment (22), and bacteria must be able to both respond immediately to osmotic shock, which might occur during transitions between growth environments, and sustain growth under lasting conditions of osmotic stress. As an opportunistic pathogen of humans, Pseudomonas aeruginosa employs adaptive responses that originally evolved for survival in diverse and often stressful environmental conditions (21,22). Hence, genes differentially expressed in response to osmotic stress may play a key role in the prevalence and persistence of P. aeruginosa in osmotically stressful infection sites (9). Aside from the accumulation of osmoprotectants, very little is known about osmoadaptive processes in P. aeruginosa (3,5). In this study we used Affymetrix GeneChip microarrays to investigate the transcriptional responses of P. aeruginosa to both osmotic up-shock and growth under steady-state osmotic stress conditions.Bacterial growth conditions and genetic manipulations. P. aeruginosa PA14 was grown in modified minimal A medium (14) containing 60 mM K 2 HPO 4 , 30 mM KH 2 PO 4 , 7.5 mM (NH 4 ) 2 SO 4 , 1 mM MgSO 4 , 10 M FeSO 4 , and 17 mM glucose, with or without 0.3 M NaCl or 0.7 M sucrose, pH 7.1. A 40-ml volume of medium was inoculated with 0.3 ml of washed cells from an overnight culture to yield a starting optical density at 600 nm (OD 600 ) of ϳ0.03. Log-phase cells used for DNA microarray analysis under steady-state conditions were harvested at an OD 600 of 0.25. For the osmotic up-shock experiments, 3.9 ml of prewarmed minimal medium containing 3 M NaCl (pH 7.1) was added to 35 ml of log-phase culture (OD 600 , 0.25) to yield a final NaCl concentration of 0.3 M. As a control, 3.9 ml of prewarmed minimal medium without NaCl was added to 35 ml of log-phase culture. Cells were harvested for gene expression analysis 15 to 60 min after up-shock. All incubations were performed in a 37°C water bath with shaking at 200 rpm.RNA isolation, removal of contaminating DNA, cDNA synthesis, and fragmentation of cDNA were performed as previously described (16). Processing of the P. aeruginosa GeneChips (Affymetrix) was performed at the University of Tulsa Microarray Facility per Affymetrix protocols. Data analysis was performed using Affymetrix Microarray Suite software; only those genes differentially regulated at least threefold were considered. In general, 70% to 75% of the ϳ5,500 open reading frames (ORFs) in P. aeruginosa (19) were detectable on the GeneChips.The steady...