We designed specific primers for Coniothyrium minitans, a sclerotia-parasitizing biocontrol agent (BCA), and quantified its biomass in the field by quantitative polymerase chain reaction. Because chemical properties of the soil can decrease the DNA extraction efficiency and DNA polymerase activity, standard curves were calibrated by adding known concentrations of BCA to sterilized field soil. The BCA biomass was monitored over time and after various treatments. Because the distribution of the BCA biomass was uneven in the field, a method to spread BCA uniformly in the field is needed.