In the countercurrent chromatography and centrifugal partition chromatography, separation method transfer and scale-up is often described as an easy and straightforward procedure. Separation methods are usually developed on lab scale columns and subsequently transferred using linear scale-up factors to semi-preparative or preparative columns of the same column design. However, the separation methods described in the literature have been developed on various columns of different design and size. This is accompanied by differences in the separation behavior of the columns and therefore makes separation method transfer difficult. In the current study, the separation performances of different columns were evaluated and compared. Linear correlations of stationary phase retention and column efficiency as a function of flow rate were found to be applicable for the calculation of separation resolution in the typical operating range of each column. In this context, a two-point short-cut approach for a fast column characterization is recommended. This allows a quick prediction of the separation method transferability between columns, which saves experimental time and effort. In the current study, the transferability between five different columns from lab scale countercurrent chromatography (CCC) (18 mL) to semi-preparative centrifugal partition chromatography (CPCs) (250 mL) with different cell numbers and design is investigated.Separations 2019, 6, 36 2 of 16 often differ significantly in column design as well as size. Consequently, suitable operating parameters (e.g., flow rate, rotational speed) and separation performances (e.g., stationary phase retention, column efficiency) between the columns are also different. Therefore, efficient and systematic strategies are needed to quickly transfer separation methods between different apparatuses.In conventional liquid chromatography (LC), e.g., High-performance liquid chromatography (HPLC), clear rules exist on how to transfer batch separation methods between columns. Here, columns are of cylindrical shape and packed with a solid stationary phase. The design parameters are column diameter, length and stationary phase particle size. In general, sample load, i.e., the feed sample concentration and relative volumetric column loading, is kept constant and the same or a better number of theoretical stages is aimed for. To achieve these criteria when transferring a separation method, usually the particle size and the column length are kept the same, while the cross sectional area and the mobile phase flow rate are adjusted in order to guarantee the same mobile phase velocity in both columns [6]. In literature, this approach was studied also for applicability in CCC and CPC. The same mobile phase linear velocity was used in both columns when transferring the separation method between columns [7]. However, this is difficult, especially in CPC, since the cross-sectional area of the CPC cells is not constant and changes along the cells of different geometries. It was shown, that an av...