Thioredoxin (Trx) and GSH are the major thiol antioxidants protecting cells from oxidative stress-induced cytotoxicity. Redox states of Trx and GSH have been used as indicators of oxidative stress. Accumulating studies suggest that Trx and GSH redox systems regulate cell signaling and metabolic pathways differently and independently during diverse stressful conditions. In the current study, we used a mass spectrometry-based redox proteomics approach to test responses of the cysteine (Cys) proteome to selective disruption of the Trx-and GSH-dependent systems. Auranofin (ARF) was used to inhibit Trx reductase without detectable oxidation of the GSH/GSSG couple, and buthionine sulfoximine (BSO) was used to deplete GSH without detectable oxidation of Trx1. Results for 606 Cys-containing peptides (peptidyl Cys) showed that 36% were oxidized more than 1.3-fold by ARF, whereas BSO-induced oxidation of peptidyl Cys was only 10%. Mean fold oxidation of these peptides was also higher by ARF than BSO treatment. Analysis of potential functional pathways showed that ARF oxidized peptides associated with glycolysis, cytoskeleton remodeling, translation and cell adhesion. Of 60 peptidyl Cys oxidized due to depletion of GSH, 41 were also oxidized by ARF and included proteins of translation and cell adhesion but not glycolysis or cytoskeletal remodeling. Studies to test functional correlates showed that pyruvate kinase activity and lactate levels were decreased with ARF but not BSO, confirming the effects on glycolysis-associated proteins are sensitive to oxidation by ARF. These data show that the Trx system regulates a broader range of proteins than the GSH system, support distinct function of Oxidative stress is associated with numerous human diseases and results from alteration in cellular redox systems (1-3). Cellular redox mechanisms and signaling are controlled by two major thiol antioxidants, thioredoxin (Trx) 1 and glutathione (GSH). The Trx system, composed of Trx, Trx reductase (TrxR), Trx peroxidase/peroxiredoxin (Prx), and NADPH, has a wide range of cellular activities in redox control, cell proliferation, growth and survival, regulation of transcription, and cell morphology and structure (4 -6). The Trx family includes evolutionary conserved proteins that contain two catalytically active cysteine (Cys) residues that can reduce disulfide bonds of numerous target proteins in the Cys proteome, e.g. apoptosis signaling kinase-1 (ASK-1), Trx1-interacting protein (Txnip), transcription factors, and actin. In addition to catalytic activity, Trx binds to target proteins and further controls protein activity and biological function. For example, ASK-1 binds to Trx in physiologic conditions; however, under stressful conditions, it is dissociated from Trx, which then stimulates apoptotic signaling leading to cell death (7). The diverse functions of Trx suggest a nonspecific nature to its function, yet kinetic studies also show differences in activities with different substrates (8 -10), implying that an underlying redox organi...