The potassium channel accessory subunit KChIP2 associates with Kv4.2 channels in the cardiac myocyte and is involved in the regulation of the transient outward current (I to ) during the early phase of repolarization of the action potential. As a first step to biophysically probe the mechanism of KChIP2, we have chemically synthesized its minimal isoform, KChIP2d, using Boc chemistry solid phase peptide synthesis in conjunction with native chemical ligation. The synthetic KChIP2d protein is primarily alpha-helical as predicted and becomes more structured upon binding calcium as assessed by 1 H-NMR and CD spectroscopy. Synthetic KChIP2d is in a monomer-dimer equilibrium in solution, and there is evidence for two monomer binding sites on an N-terminal peptide of Kv4.2. Planned future studies include the incorporation of fluorescent and spin labeled probes in KChIP2d to yield structural information in parallel with electrophysiologic studies to elucidate KChIP2d's mechanism of action.Keywords: potassium channel; accessory subunit; total chemical synthesis; kinetically controlled ligation; Boc chemistry solid phase peptide synthesis Supplemental material: see www.proteinscience.org Potassium channels are critical in stabilizing the membrane potential of the cell. In electrically excitable cells, such as those in the heart, mutations in potassium channels or their auxiliary subunits are associated with arrhythmias and other conduction defects (Delisle et al. 2004). The expression and biophysical properties of potassium channels are controlled by different families of regulatory subunits, one class of which is the K channel interacting proteins (KChIPs) . KChIPs are soluble, cytoplasmic proteins that contain EF hand calcium binding motifs and that bind to the N termini of Kv4 channels to regulate them through an as-yet-unidentified mechanism (Burgoyne et al. 2004). KChIP2 is the predominant member of this family in the cardiac myocyte, where it associates with Kv4.2 and 4.3 channels and is responsible for regulation of the transient outward current (I to ) in the early phase of repolarization during the cardiac action potential (Pourrier et al. 2003). A mouse knockout of KChIP2 lacks I to and has an increased action potential duration and an increased susceptibility to ventricular tachyarrythmias (Kuo et al. 2001), suggesting an important functional role for KChIP2 in the regulation of the myocyte membrane potential.The KChIP2 gene has 10 exons, and eight known splice variants have been identified (Decher et al. 2004), the largest of which is KChIP2a, containing four EF hands, and the smallest of which is KChIP2d, a minimal isoform that corresponds to the C-terminal seventy residues of KChIP2a and contains only one EF hand ( Fig. 1 Article published online ahead of print. Article and publication date are at http://www.proteinscience.org/cgi