Microcystis aeruginosa is the dominant species during cyanobacterial blooms in freshwater lakes. In the present study, we compared the bioaccumulation characteristics of cadmium (Cd) and zinc (Zn) in Microcystis cells. In short-term uptake tests, a rapid sorption of Cd and Zn occurred in the first few minutes, with a subsequent slower internalization process. No obvious difference was observed between Zn and Cd in terms of their short-term uptake kinetics. In efflux experiments, elimination of Zn from the cells was faster than that of Cd. In the 72-h exposure tests, the intracellular Cd concentrations increased with exposure time whereas the intracellular Zn concentrations always reached a plateau. The cellular Cd showed greater variation than the cellular Zn at various free Cd 2+ or Zn 2+ concentrations. The differences in Cd and Zn accumulation and elimination indicated that Microcystis cells had a higher bioaccumulation capacity for Cd than for Zn. In field studies, the bioconcentration factor (BCF) of Cd in lake-harvested Microcystis was more than 10 times higher than those of other metals. The results of the present study strongly suggested that the bloom-forming Microcystis may affect the Cd transportation and biogeochemical cycling in eutrophic freshwater ecosystems. The bioaccumulation behaviors of heavy metals have attracted substantial attention. When toxic metals are discharged into natural waters, appropriate methods are required to remove these metal pollutants. Conventional methods including physiochemical and biological technologies have been employed to remove toxic metals from aqueous solutions [1,2]. Phytoplankton is suggested to be potential and attractive biosorbents to concentrate heavy metals due to their ubiquitous presence in aquatic ecosystems and high binding affinity to metals [1]. Generally, dried phytoplankton biomass is often used in the removal of metals with concentrations greater than several grams per liter [3,4]. In the case of low soluble metal concentrations in natural waters, phytoplankton cells play important roles in metal bioaccumulation and transportation, which are of interest and need further investigation. Cadmium (Cd) and zinc (Zn) are major metal pollutants commonly found in industrial effluents. Cd is a non-essential element for most organisms and can be accumulated in organisms and subsequently result in severe toxicity. Zn is an essential micronutrient at low concentrations, which is also potentially hazardous to organisms when present at higher concentrations [5,6]. The Cd and Zn have similar chemical properties in natural aquatic environments; thus, a comparative study of these two substances might have relevant ecological implications. Bioaccumulation of metals by different groups of phytoplankton has been investigated in previous studies [7][8][9]. Among these algal biosorbents, cyanobacteria are attractive because they are ubiquitous in nature and exhibit good