Some experts believe that organic agriculture is more adaptable compared to conventional agriculture. Accordingly, the purpose of this study is to assess organic and conventional farmers’ perception and adaptation to climate change and analyse the factors that influence such decisions. The survey was conducted in Java, involving 112 organic farmers and 112 conventional farmers. The chi-square test was used to differentiate climate change perceptions and adaptation strategies applied by farmers. The factors that influenced the selection of the adaptation strategies were analysed using logistic regression. The results of analysis found that organic farmers have more precise perceptions of climate change than that of conventional farmers. Organic farmers more commonly implement mixed cropping, crop rotation, increasing organic manure, using shade, and changing irrigation techniques as their adaptation strategies, while conventional farmers more commonly prefer to adjust planting and harvesting dates and use traditional climate prediction called Pranata Mangsa. The selection of farmers’ adaptation strategies is influenced by age, education, experience, distance to extension services, access to credit, information about climate and farmer groups, as well as farmers’ perceptions of climate change. The results of the study recommend that policy makers increase farmers’ adaptive capacity through investment in education and institutions to support climate change adaptation.