To determine the target of the recently identified lead compound NSC130362 that is responsible for its 22 selective anti-cancer efficacy and safety in normal cells, structure-activity relationship (SAR) studies were 23 conducted. First, NSC13062 was validated as a starting compound for the described SAR studies in a variety of 24 cell-based viability assays. Then, a small library of 1,4-naphthoquinines (1,4-NQs) and quinoline-5,8-diones was 25 2 tested in cell viability assays using pancreatic cancer MIA PaCa-2 cells and normal human hepatocytes. The 26 obtained data allowed us to select a set of both non-toxic compounds that preferentially induced apoptosis in 27 cancer cells and toxic compounds that induced apoptosis in both cancer and normal cells. Anti-cancer activity of 28 the selected non-toxic compounds was confirmed in viability assays using breast cancer HCC1187 cells. 29 Consequently, the two sets of compounds were tested in multiple cell-based and in vitro activity assays to identify 30 key factors responsible for the observed activity. Inhibition of the mitochondrial electron transfer chain (ETC) is 31 a key distinguishing activity between the non-toxic and toxic compounds. Finally, we developed a mathematical 32 model that was able to distinguish these two sets of compounds. The development of this model supports our 33 conclusion that appropriate quantitative SAR (QSAR) models have the potential to be employed to develop anti-34 cancer compounds with improved potency while maintaining non-toxicity to normal cells. 35 36 37Materials and Methods. 38 Reagents. All reagents were from Sigma, unless otherwise indicated. CellTiter-Glo reagent was from Promega. 39 Glutathione reductase (GSR) activity kit was from Cayman. GSR producing plasmid was a kind gift of Dr. Becker 40 (Justus-Liebig University Giessen). GSR was expressed in BL21(DE3) cells and purified by both metal chelating 41 and affinity chromatography on 2',5'-ADP-Sepharose as described [1].
42Cells. Human prostate carcinoma, breast, and pancreatic carcinoma cells were obtained from ATCC. 43 Chemotherapy resistant prostate carcinoma cells were from Dr. Korkola. Human primary hepatocytes were 44 obtained from Lonza. All cells were cultured according to the provider's guidelines. Bone marrow aspirates or 45 peripheral blood samples were collected from acute myeloid leukemia (AML) patients under an OHSU 46 Institutional Review Board (IRB) approved research collection protocol which covers in vitro drug testing of 47 leukemia cells and genetic studies. Patients signed an IRB-approved written consent form after verbal consent 48 was obtained. Mononuclear cells were isolated from peripheral blood samples using a Ficoll gradient and viability 49 of isolated mononuclear cells was assayed using Guava Viacount reagent. All patients were treated in accordance 50 3 with the ethical guidelines laid out in the Declaration of Helsinki. AML cells were cultured in RPMI medium 51 supplemented with 10% fetal bovine serum.
52Hydrogen peroxide c...