Epstein-Barr virus (EBV) nuclear antigen 3C (EBNA-3C) is a large transcriptional regulator essential for EBV-mediated immortalization of B lymphocytes. We previously identified interactions between EBNA-3C and two cellular transcription factors, J and Spi proteins, through which EBNA-3C regulates transcription. To better understand the contribution of these interactions to EBNA-3C function and EBV latency, we examined whether they are conserved in the homologous proteins of nonhuman primate lymphocryptoviruses (LCVs), which bear a strong genetic and biological similarity to EBV. The homologue of EBNA-3C encoded by the LCV that infects baboons (BaLCV) was found to be only 35% identical in sequence to its EBV counterpart. Of particular significance, this homology localized predominantly to the N-terminal half of the molecule, which encompasses the domains in EBNA-3C that interact with J and Spi proteins. Like EBNA-3C, both BaLCV and rhesus macaque LCV (RhLCV) 3C proteins bound to J and repressed transcription mediated by EBNA-2 through its interaction with J. Both nonhuman primate 3C proteins were also able to activate transcription mediated by the Spi proteins in the presence of EBNA-2. Like EBNA-3C, a domain encompassing the putative basic leucine zipper motif of the BaLCV-3C protein directly interacted with both Spi-1 and Spi-B. Surprisingly, a recently identified motif in EBNA-3C that mediates repression was not identifiable in the BaLCV-3C protein.Finally, although the C terminus of BaLCV-3C bears minimal homology to EBNA-3C, it nonetheless contains a C-terminal domain rich in glutamine and proline that was able to function as a potent transcriptional activation domain, as does the C terminus of EBNA-3C. The conservation of these functional motifs despite poor overall homology among the LCV 3C proteins strongly suggests that the interactions of EBNA-3C with J and Spi do indeed play significant roles in the life cycle of EBV.Studies using recombinant Epstein-Barr virus (EBV) genomes have identified six latent infection proteins that are essential for EBV-mediated immortalization of B lymphocytes in vitro: EBV nuclear antigen 1 (EBNA-1), EBNA-2, EBNA-LP, EBNA-3A, EBNA-3C, and latent membrane protein (LMP) 1 (5,17,27,29,34,53). Two of these viral proteins, and perhaps the least well understood, are members of the EBNA-3 family of transcriptional regulators. Although the three EBNA-3 genes (3A, 3B, and 3C) share a similar gene structure and are likely to have evolved from a common ancestral gene, the encoded proteins are highly divergent in amino acid sequence. The EBNA-3 proteins are also likely to have diverged functionally, since EBNA-3A and EBNA-3C, but not EBNA-3B, are essential for EBV-mediated immortalization of B lymphocytes. Despite their differences, all EBNA-3 proteins function as transcriptional regulatory proteins whose transcriptional effects are mediated through interactions with cellular sequence-specific DNA-binding proteins, rather than by binding directly to DNA (26,45,50,57,58). In addition to...