The intermolecular interactions between methanol/water and Nafion™ membranes have been investigated using IR spectroscopy. The evolution of IR spectra of the Nafion™ membranes, immersed in various concentrations of methanol solution depends strongly on the methanol concentration. The O–H bending vibration modes at 1,636, 1,660 and 1,672 cm–1 associated with the hydrogen bonding of (H3O+…SO3–) as well as (CH3OH2+…SO3–), and at 1,702, 1,717 and 1,711–1,736 cm–1 associated with the hydrogen bonding of (CF2…H–O–CH3), (CF2…H–OH), (CF2…+H3O) and (CF2…H–OSO2–) were observed. The vibration mode of (CF2…H–O) was found to be appearing obviously at 3,821–3,900 cm–1 when the Nafion™ membrane was immersed in the methanol solution with concentration higher than 6 M. On the other hand, the wavenumber of the O–H stretching peak increases with an increase in the methanol concentration. Results of IR spectra revealed that the methanol molecules show better capability to penetrate into the hydrophobic domain of the Nafion™ membrane than water. The intermolecular interaction between the hydrophobic domains of Nafion™ and methanol molecules becomes more observable at a higher methanol concentration.