Navigation aids play a crucial role in guiding ship navigation and marking safe water areas. Therefore, ensuring the accurate and efficient recognition of a navigation aid’s state is critical for maritime safety. To address the issue of sparse features in navigation aid data, this paper proposes an approach that involves three distinct processes: the extension of rank entropy space, the fusion of multi-domain features, and the extraction of hidden features (EFE). Based on these processes, this paper introduces a new LSTM model termed EFE-LSTM. Specifically, in the feature extension module, we introduce a rank entropy operator for space extension. This method effectively captures uncertainty in data distribution and the interrelationships among features. The feature fusion module introduces new features in the time domain, frequency domain, and time–frequency domain, capturing the dynamic features of signals across multiple dimensions. Finally, in the feature extraction module, we employ the BiLSTM model to capture the hidden abstract features of navigational signals, enabling the model to more effectively differentiate between various navigation aids states. Extensive experimental results on four real-world navigation aid datasets indicate that the proposed model outperforms other benchmark algorithms, achieving the highest accuracy among all state recognition models at 92.32%.