The concept of logistics is a supply chain system to facilitate the movement of goods and resources (raw materials), delivery scheduling, storage, and marketing to consumer endpoints that support economic growth. The increase in logistics transportation also has a negative impact, especially environmental problems, the effectiveness of logistics transportation, and the quality of materials and goods which will eventually involve economic problems. This article aims to compare the implementation of modern logistics transportation systems in the European Union and Indonesia with the application of green logistics. This study uses a comparative study method with a qualitative descriptive approach to modern logistics transportation that applies the concept of green logistics. The problem of European Union logistics transportation is only in the human resources sector and congestion in a certain period. The solution is to add regulations related to alternative or manipulated road systems to reduce congestion. On the other hand, the problems that exist in Indonesia are related to the low facilities, regulations, and investment for logistics transportation. As a solution, several regulations and programs have been implemented as a green logistics concept such as anti-ODOL regulations, and the sea toll program.