Thiopurine drugs, including 6-thioguanine ( S G), 6-mercaptopurine, and azathioprine, are widely employed anticancer agents and immunosuppressants. The formation of S G nucleotides from the thiopurine prodrugs and their subsequent incorporation into nucleic acids are important for the drugs to exert their cytotoxic effects.S G in DNA can be methylated by S-adenosyl-L-methionine to give S 6 -methylthioguanine (S 6 mG) and oxidized by UVA light to render guanine-S 6 -sulfonic acid ( SO3H G). Here, we constructed single-stranded M13 shuttle vectors carrying a S G, S 6 mG, or SO3H G at a unique site and allowed the vectors to propagate in wild-type and bypass polymerasedeficient Escherichia coli cells. Analysis of the replication products by using the competitive replication and adduct bypass and a slightly modified restriction enzyme digestion and post-labeling assays revealed that, although none of the three thionucleosides considerably blocked DNA replication in all transfected E. coli cells, both S 6 mG and SO3H G were highly mutagenic, which resulted in G3 A mutation at frequencies of 94 and 77%, respectively, in wild-type E. coli cells. Deficiency in bypass polymerases does not result in alteration of mutation frequencies of these two lesions. In contrast to what was found from previous steady-state kinetic analysis, our data demonstrated that 6-thioguanine is mutagenic, with G3 A transition occurring at a frequency of ϳ10%. The mutagenic properties of 6-thioguanine and its derivatives revealed in the present study offered important knowledge about the biological implications of these thionucleosides.