The Andean farmer conserves and maintains the existing genetic diversity of potato cultivars by means of clonal propagation of tubers . However, surveys of traditional farms showed that botanical seed propagation was used for disease elimination, stock rejuvenation and the creation of new cultivars . Electrophoretic surveys based on 542 tubers collected from 18 markets sampled in the Cusco area disclosed a total of 229 different cultivars from diploid, triploid and tetraploid forms of Solanum tuberosum L . These could be classified by isozyme cluster analysis into four major groups and six minor groups . However, they did not agree with groups based on flesh or skin color . It is therefore concluded that all genotypes belong to a single, large gene pool with considerable gene flow between cultivars of different groups . When the samples were grouped by the three most common tuber skin colors, namely red/pink ('Q'ompis type'), purple ('Yana Imilla' type), and yellowish/brown ('Yuraq Kusi' type), similar allozymes were observed in all three classes . The structure of the isozymic phenotypes within each group indicate that they may have been derived as segregants after outcrossing of diverse parental types . In order to provide further evidence for the origin of new types by hybridization, two segregating diploid progenies were generated by crossing purple by yellow skin types . In the resulting F1, most of the tuber phenotypes observed in the Andean varieties were reproduced in these crosses . It can be concluded that the Andean potatoes form a large and plastic gene pool amplified and renovated by outcrossing followed in some cases by human selection of desirable phenotypes .