The mixing protocol effect was investigated in nanocomposites based on polyamide 6 (PA6) and maleic anhydride grafted ethylene-propylene-diene (EPDM-MA), using Ni-Zn ferrite as filler. The nanocomposites were processed using an internal mixer and specimens were injection molded. Compounds properties were investigated through Izod impact strength, tensile strength, x-ray diffraction (XRD), magnetic measurements, differential scanning calorimetry (DSC), thermogravimetry (TG), heat deflection temperature (HDT), and scanning electron microscopy (SEM). PA6/EPDM-MA mixture showed super-tough behavior, with an increase of around 918% in impact strength, compared with PA6. However, there was a loss close to 50% in the elastic modulus and 5% in HDT, due to the high flexibility. In view of this, this mixture was selected for the production of nanocomposites toughened with Ni-Zn ferrite, using three mixing sequences. When the nanocomposite was processed by the simultaneous mixing of all components (PA6/EPDM-MA/Ni-Zn), the highest impact strength (458 J/m) was reached, corresponding to a gain of 486%, compared with PA6. On the other hand, when Ni-Zn ferrite and PA6 were initially premixed by melting, before EPDM-MA addition in a second processing step, HDT and impact strength properties increased by 6% and 281%, in relation to PA6. In addition, the nanocomposites showed magnetic responses, with a soft material behavior, that is, they magnetize and demagnetize easily. In general, toughened and magnetic nanocomposites were produced, with good mechanical and thermal properties, displaying potential to produce magnetic films.