This study, using an experimental approach, focuses on the effect of downward seepage on a threshold alluvial channel morphology and corresponding turbulent flow characteristics. In all the experiments, we observed that the streamwise time-averaged velocities and Reynolds shear stresses were increased under the influence of downward seepage. Scales of eddy length and eddy turnover time were significantly increased with the application of downward seepage, leading to sediment transport and initiation of bedforms along the channel length. As the amount of seepage discharge increased, eddy length and turnover time were further increased, causing the development of larger bedforms. It was revealed that the geometry of bedforms was linked with the size of eddies. In this work, statistics of bedform dynamics are presented in terms of multi-scalar bedforms in the presence of seepage. These multi-scalar ubiquitous bedforms cast a potential impact on flow turbulence as well as stream bed morphology in channels. We used wavelet to analyse temporally lagged spatial bed elevation profiles that were obtained from a set of laboratory experiments and synchronized the wavelet coefficients with bed elevation fluctuations at different length scales. A spatial crosscorrelation analysis, based on the wavelet coefficients, was performed on these bed elevation datasets to observe the effect of downward seepage on the dynamic behaviour of bedforms at different length scales. It was found that celerity of bedforms reduced with increase in seepage percentage. Bedform celerity was best approximated by a probability density function such as Rayleigh distribution under varying downward seepage. Further, statistical analysis of physical parameters of bedforms ascertained that the reduction in bedform celerity was a result of increased bedform size.