The adipocyte and heart fatty acid-binding proteins (Aand HFABP) are members of a lipid-binding protein family with a -barrel body capped by a small helix-turn-helix motif. Both proteins are hypothesized to transport fatty acid (FA) to phospholipid membranes through a collisional process. Previously, we suggested that the helical domain is particularly important for the electrostatic interactions involved in this transfer mechanism (Herr, Despite their using qualitatively similar FA transfer mechanisms, differences in absolute transfer rates as well as regulation of transfer from AFABP versus HFABP, prompted us to consider the structural determinants that underlie these functional disparities. To determine the specific elements underlying the functional differences between AFABP and HFABP in FA transfer, two pairs of chimeric proteins were generated. The first and second pairs had the entire helical domain and the first ␣-helix exchanged between A-and HFABP, respectively. The transfer rates of anthroyloxy-labeled fatty acid from proteins to small unilamellar vesicles were compared with the wild type AFABP and HFABP. The results suggest that the ␣II-helix is important in determining the absolute FA transfer rates. Furthermore, the ␣I-helix appears to be particularly important in regulating protein sensitivity to the negative charge of membranes. The ␣I-helix of HFABP and the ␣II-helix of AFABP increased the sensitivity to anionic vesicles; the ␣I-helix of AFABP and ␣II-helix of HFABP decreased the sensitivity. The differential sensitivities to negative charge, as well as differential absolute rates of FA transfer, may help these two proteins to function uniquely in their respective cell types.FFatty acids (FA) 1 are major substrates for the synthesis of complex lipids and for energy production. Due to their limited solubility, specific carriers, known as fatty acid-binding proteins (FABP), are expressed in various tissues that use FA. Structural analyses of several FABPs have revealed markedly similar three-dimensional folds consisting of ten antiparallel -strands that form a -barrel, which is capped by two short ␣-helices arranged as a helix-turn-helix segment (1-4). It is believed this ␣-helical domain, along with the  C-D and D-E turns, functions as a "dynamic portal" that regulates FA entry and exit from the internal ligand binding cavity (5-7).Heart FABP (HFABP) and adipocyte FABP (AFABP) are homologous proteins sharing Ͼ60% amino acid sequence identity (8). Both proteins bind one FA in the binding pocket (1, 2), although x-ray crystallographic studies show that the FA adopts an entirely different conformation in their respective binding sites (9, 10). AFABP has generally lower binding affinities for FA than HFABP (11), and it appears that HFABP shows greater affinity for saturated versus unsaturated fatty acids, whereas AFABP does not show such a preference (9). Aand HFABP also exhibit unique patterns of tissue distribution. AFABP is found in adipose tissue and monocytes/macrophages (12, 13), whereas ...